BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473556
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34020.1 | Symbols: | Nucleotide-sugar transporter family p... 2194 0.0
AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family p... 1114 0.0
> AT1G34020.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:12366854-12369178 FORWARD LENGTH=1463
Length=1463
Score = 2194 bits (1188), Expect = 0.0
Identities = 1372/1458 (94%), Gaps = 23/1458 (2%)
Strand=Plus/Plus
Query 1 TACTCTCTCTTCTCGCTCCACGAGCCCTACGCTTCACAA----CTGCCTTTTTCAGATTA 56
||| ||||||| || |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 6 TACACTCTCTTGTCACTCCACGAGCCCTACGCTTCCCAACCGCCTGCCTTTTTCAGATTA 65
Query 57 CCTCCGATTTCTACCACTCTCG-C--CG--GT-----G--CTCCGATCATCTCCGCACGA 104
|||||| ||||||||||||||| | || || | ||||||||| ||||||||||
Sbjct 66 CCTCCGGTTTCTACCACTCTCGCCGTCGCCGTCACCGGTACTCCGATCACCTCCGCACGA 125
Query 105 TTCATTTCCGATTTGCGTTTTTCTCCTCTTTAGCGGAAAGTGAGTCTTCTGGAGAATGGG 164
||||||||| |||||| |||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 126 TTCATTTCCTATTTGCATTTTTCACCTCTCTAGCGGAAAGTGAGTCTTCTCGAGAATGGG 185
Query 165 AGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAG--A--TCA-AAAAATG 219
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 186 AGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAGTTAGTTCAGAAAAATG 245
Query 220 GCTCCTGTGAGTAAAGCTGATAAGAAGGCAGCAGTAGATGCTGCTGCGTGGATGTTCAAT 279
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 246 GCTCCAGTGAGTAAAGCTGATAAGAAGGCAGCCGTAGATGCTGCTGCGTGGATGTTCAAT 305
Query 280 GTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTAT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTAT 365
Query 340 AGCTTTGCTACAACCTTAACCGGTTTACATTTCGCGACAACGACTCTGATGACGATTGTT 399
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 366 AGCTTTGCTACAACGTTAACTGGTTTACATTTCGCTACAACGACTCTGATGACGCTTGTT 425
Query 400 TTAAGATGTCTTGGTTATATTCAGCCTTCTCATCTTCCGTTTACGGAGCTTTTGAGATTT 459
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTAAGATGTCTTGGTTACATTCAGCCTTCTCATCTTCCGTTTACGGAGCTTTTGAGATTT 485
Query 460 ATTCTGTTTGCGAATTTCTCGATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTC 519
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 486 ATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTT 545
Query 520 GGTTTCTATCAGATTGCCAAGCTCAGTATGATTCCTGTATCCTGTTTGTTGGAAATGGTT 579
||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 546 GGTTTTTATCAGATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTT 605
Query 580 TTCGATAAGATTCGTTACTCCAGAGACACAAAGCTTAGCATAGGATTGGTTCTTGTGGGT 639
||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 606 TTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTCTTGTGGGT 665
Query 640 GTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGCTTTGTAGCCGCTTTC 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 GTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGATTTGTAGCCGCTTTC 725
Query 700 GTTGCCGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTCAGCGCAAGTAC 759
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GTTGCTGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTCAGCGCAAGTAC 785
Query 760 TCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCTGCAACATTGCTG 819
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 786 TCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCCGCAACATTACTG 845
Query 820 GTAGTTGGCCCATTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACATGTACGACTAC 879
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 846 GTAGTTGGCCCGTTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACATGTACGATTAC 905
Query 880 AATTTGGTCTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATCGGAACCAACCTA 939
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 906 AACTTGGTTTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATTGGAACCAACCTA 965
Query 940 AGCCAGTTCATCTGCATTGGGAGATTCACGGCTGTGTCGTTCCAAGTCCTAGGACACATG 999
||||||||||||||||| || |||||||| ||||| ||||||||||| || |||||||||
Sbjct 966 AGCCAGTTCATCTGCATCGGAAGATTCACAGCTGTATCGTTCCAAGTGCTGGGACACATG 1025
Query 1000 AAGACGATCCTAGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGTCTAAACTTG 1059
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1026 AAGACGATCCTGGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGTCTTAACTTG 1085
Query 1060 CACGTGGTTGTTGGAATGATAATTGCAGTACTGGGTATGATCTGGTACGGTAATGCCTCT 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CACGTGGTTGTTGGAATGATAATTGCAGTACTGGGTATGATCTGGTACGGTAATGCCTCT 1145
Query 1120 TCGAAGCCAGGAGGCAAAGAGCGACGAAACTATTCTCTTCCAACGACCCGTCAACAGAAA 1179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1146 TCGAAGCCAGGAGGCAAAGAGCGACGAAACTATTCTCTTCCAACTACCCGTCAACAGAAA 1205
Query 1180 CTTGGAGCTGCTTCGGATTCGGACGACAACGAAGACAAAGCCTAGTAGTAAGTAGTAAAT 1239
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1206 CTCGGAGCTGCTTCGGATTCTGACGACAACGAAGACAAAGCCTAGTAGTAAGTAGTATAT 1265
Query 1240 TATCAGGAACATCACATAGTTACATCTCTGTTTTGAATTGTTCtttttttttAGTTTAAT 1299
||||||||||||||||||||||| |||||||||||| ||||| ||||| || || |||||
Sbjct 1266 TATCAGGAACATCACATAGTTACGTCTCTGTTTTGAGTTGTT-TTTTTATT-AGCTTAAT 1323
Query 1300 TTATGATTCTCGTGCTAAATTTTGGTTTAGTGCGAAAGAAAGCGAtttttttCATACAGA 1359
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1324 TTATGATTCTCGTGCTAAATTTTGGTTTGGTACGAAAGAAAGCGAATTTTTTCATACAGA 1383
Query 1360 CGATTGAGATTTTTGTAATGCATTTTTGCGGAATCAAGTTACCTCAACGCACGGCTTCCC 1419
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
Sbjct 1384 CGTTTGAGATTTTTGTAATGCATTTTTGCGAAATCAAGTTACATCAACGCACAGCTTTCA 1443
Query 1420 ATATTGCAATAAGAAATT 1437
|||||| |||||||||||
Sbjct 1444 ATATTGAAATAAGAAATT 1461
> AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr4:6175176-6177293 REVERSE LENGTH=1388
Length=1388
Score = 1114 bits (603), Expect = 0.0
Identities = 892/1030 (87%), Gaps = 25/1030 (2%)
Strand=Plus/Plus
Query 216 AATGGCTCCTGTGAGTAAAGCTGATAAGAAGGCAGCAGTAGATGCTGCTGCGTGGATGTT 275
||||||||| |||| ||| | |||||||| ||| || ||||||||||||| ||||||||
Sbjct 141 AATGGCTCCAGTGAAAAAATCAGATAAGAAAGCAACATTAGATGCTGCTGCTTGGATGTT 200
Query 276 CAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGG 335
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 CAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGG 260
Query 336 -TTATAGCTTTGCTACAACCTTAACCGGTTTACATTTCGCGACAACGAC-TCTGATGACG 393
|| ||||||||||||||| |||||||||||||||||||| || ||||| | ||||||||
Sbjct 261 CTT-TAGCTTTGCTACAACGTTAACCGGTTTACATTTCGCCACTACGACGT-TGATGACG 318
Query 394 ATTGTTTTAAGATGTCTT-GGTTATATTCAGCCTTCTCATCTTCCGTTTACGGAGCTT-T 451
|||||||||||||| || || ||||| || |||||||||||||| ||||| |||||| |
Sbjct 319 CTTGTTTTAAGATGT-TTAGGATATATACAACCTTCTCATCTTCCATTTACAGAGCTTCT 377
Query 452 TGAGATTTATTCTGTTTGCGAATTTCTCGATTGTTGGAATGAATGTCAGTCTTATGTGGA 511
| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 378 TAAG-TTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGA 436
Query 512 ACTCTGTCGG-TTTCTATCAGATTGCCAAGCTCAGTATGATTCCTGTATCCTGTTTGTTG 570
||||||| || ||| ||||||||||| ||||| || |||||||||||||| || ||||||
Sbjct 437 ACTCTGTTGGGTTT-TATCAGATTGCAAAGCTTAGCATGATTCCTGTATCATGCTTGTTG 495
Query 571 GAAATGGT-TTTCGATAAGATTCGTTACTCCAGAGACACAAAGCTTAGCATAGGA-TTGG 628
||| | || ||| ||||||||||||||||| ||||| ||||| |||||||| ||| |||
Sbjct 496 GAAGTAGTATTT-GATAAGATTCGTTACTCAAGAGATACAAAACTTAGCATTGGACTTG- 553
Query 629 TTCTTGTGGGTGTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGCTTTG 688
||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 554 TTCTTGTTGGTGTTGGTGTTTGTACTGTTACTGATGTTAGTGTTAACACCAAAGGTTTTG 613
Query 689 TAGCCGCTTTCGTTGCCGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTC 748
| || ||||| ||||| ||||||||||||||| |||||||||||||||||||||| || |
Sbjct 614 TTGCTGCTTTTGTTGCTGTGTGGAGTACTGCTTTGCAACAATACTATGTACATTATCTAC 673
Query 749 AGCGCAAGTACTCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCTG 808
|||| ||||||||||||| ||||||||||||| |||| ||||| |||||||| || ||||
Sbjct 674 AGCGAAAGTACTCGCTTAGCTCATTCAACCTACTGGGTCATACTGCTCCAGCTCAGGCTG 733
Query 809 CAACATTGCTGGTAGTTGGCCCATTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACA 868
|||| || || |||| || |||||||| || |||||| ||||||| ||| | |||||||
Sbjct 734 CAACGTTATTGATAGTCGGTCCATTTCTCGACTATTGGTTGACAGACAAACGGGTAGACA 793
Query 869 TGTACGACTACAATT-TGGTCTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATC 927
|||| || ||||| | || |||| ||| ||||||||||||| |||||||||||||| |||
Sbjct 794 TGTATGATTACAACTCTG-TCTCTGTGATGTTTATAACCCTCTCGTGCACAATAGCAATC 852
Query 928 GGAACCAACCTAAGCCAGTTCATCTGCATTGGGAGATTCACGGCTGTGTCGTTCCAAGTC 987
|| || ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct 853 GGGACAAACCTGAGCCAGTTCATCTGCATCGGGAGATTCACAGCAGTGTCATTCCAAGTC 912
Query 988 CTAGGACACATGAAGACGATCCTAGTGCT-GATAATGGGCTTCTTCTTCTTTGGTAGAGA 1046
|| || || |||||||||||| | ||||| | ||||||||||||||||||||| |||||
Sbjct 913 CTGGGCCATATGAAGACGATCTTGGTGCTTG-TAATGGGCTTCTTCTTCTTTGACAGAGA 971
Query 1047 AGGTCTAAACTTGCACGTGGTTGTTGGAATGATAATTGCAGTACT-GGGTATGATCTGGT 1105
||||||||| |||| ||| || |||| ||||| ||||||||||| ||| ||||||||||
Sbjct 972 TGGTCTAAACCTGCATGTGATTCTTGGCATGATCATTGCAGTACTCGGG-ATGATCTGGT 1030
Query 1106 ACGGTAATGCCTCTTCGAAGCCAGGAGGCAAAGAGC-GACGAAACTATTCTCTTCCAACG 1164
||||||||||||| || |||||||| ||||| ||| || ||| |||||||||||||||
Sbjct 1031 ACGGTAATGCCTCGTCCAAGCCAGGCGGCAAGGAGAAGAAGAAT-TATTCTCTTCCAACG 1089
Query 1165 ACCCGTCAACAGAAACTTGGAGCTGCTTCGGATTCGGACGA-CAACGAAGACAAAGCCTA 1223
||||| |||||||||||||| ||| |||| ||||| || || || ||| || ||||| ||
Sbjct 1090 ACCCGACAACAGAAACTTGGGGCTACTTCAGATTCTGATGAACATCGA-GATAAAGCGTA 1148
Query 1224 GTA-GTAAGT 1232
| | ||||||
Sbjct 1149 GCAAGTAAGT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5