BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473557
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 904 0.0
AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:61... 612 1e-174
> AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family |
chr1:12370065-12371553 REVERSE LENGTH=767
Length=767
Score = 904 bits (489), Expect = 0.0
Identities = 541/566 (96%), Gaps = 4/566 (1%)
Strand=Plus/Plus
Query 1 AGAGAAAGCTTGAAGACGGCGAGAGCTCCATCTTTTCACAGGCACT-TCTTCTCTACAAT 59
||||||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||
Sbjct 25 AGAGAAAGCTTGAAGACGGCGAGAGCTCCATCTTTTCTCAGGCA-TCTCTTATCTTCAAA 83
Query 60 TCACAATGTCTCTGGTAGCAAATGAGGAGTTCCAGCACATTTTGCGTGTGCTCAACACTA 119
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 84 TCACAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTTTGCGTGTGCTCAACACTA 143
Query 120 ACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGGAGGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 144 ACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGAAGGA 203
Query 180 GATTGGCCAACATTGTTTGCAAAAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAGT 239
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 204 GATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAGT 263
Query 240 TATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCGAGACAGTTCAAGA 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 264 TATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCAAGACAGTTCAAGA 323
Query 300 TTCCAGACTGGTTTTTGAACAGACAGAAAGACTACAAGGACGGCAAGTACTCTCAAGTTG 359
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 324 TTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGGGAAGTACTCTCAAGTTG 383
Query 360 TCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAACGTCTCAAGAAAATCAGAA 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 384 TCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGAA 443
Query 420 ACCACCGTGGTCTGAGACATTACTGGGGTCTCCGAGTCCGTGGACAACACACCAAGACCA 479
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 444 ACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAA 503
Query 480 CTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAGCCAATGTTGCTAGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAGCCAATGTTGCTAGTT 563
Query 540 GAAGCTGGATTGGTT-TATTGATAAG 564
| ||||||||||| | | ||||||||
Sbjct 564 GCAGCTGGATTGGATCT-TTGATAAG 588
> AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:6173715-6175200
FORWARD LENGTH=799
Length=799
Score = 612 bits (331), Expect = 1e-174
Identities = 430/478 (90%), Gaps = 6/478 (1%)
Strand=Plus/Plus
Query 50 TCTCTAC-AATTCACAATGTCTCTGGTAGCAAATGAGGAGTTCCAGCACATT-TTGCGTG 107
||||| | || ||| |||||||||||| |||||||||||||| || |||||| || ||||
Sbjct 89 TCTCTGCTAA-TCAAAATGTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTT-CGTG 146
Query 108 TGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAG 167
|| | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 147 TGTTGAATACTAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTATCAAAG 206
Query 168 GTATTGGGAGGCGATTGGCCAACATTGTTTGCAAAAAAGCCGATGTCGACATGAACAAGA 227
||||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| |
Sbjct 207 GTATTGGTAGGCGATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAA 266
Query 228 GGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCGA 287
||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |
Sbjct 267 GGGCTGGTGAGTTATCTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCAAACCC-A 325
Query 288 -GACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGACTACAAGGACGGCAAG 346
| ||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||||||
Sbjct 326 CGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAG 385
Query 347 TACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAACGTCTC 406
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 386 TATTCTCAAGTTGTCTCCAATGCTCTTGACATGAAGCTGAGAGATGATCTTGAACGTCTC 445
Query 407 AAGAAAATCAGAAACCACCGTGGTCTGAGACATTACTGGGGTCTCCGAGTCCGTGGACAA 466
||||| |||||||||||||||||| |||| ||||||||||||||||| ||| | ||||||
Sbjct 446 AAGAAGATCAGAAACCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGTCAGAGGACAA 505
Query 467 CACACCAAGACCACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAG 524
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 506 CACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAAG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5