BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473558
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34040.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1927 0.0
AT1G34060.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1567 0.0
> AT1G34040.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:12374433-12376179 FORWARD
LENGTH=1374
Length=1374
Score = 1927 bits (1043), Expect = 0.0
Identities = 1275/1386 (92%), Gaps = 19/1386 (1%)
Strand=Plus/Plus
Query 1 ATGATGCATAACAAGCTACT-AGTTGCAGTGTCGATAATCTTGAATCTTCTATTCACCGT 59
||||| |||||||||||||| | |||||| |||||| |||||||||||| | |||||| |
Sbjct 1 ATGATACATAACAAGCTACTCA-TTGCAGGGTCGATCATCTTGAATCTTGTTTTCACCAT 59
Query 60 TCATATTCTTTATAATAATTCAACCACATGGAGTCCAACGTGGACCGATAGAGCCGCCTC 119
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TCATATTCTTTATAATAATACAAGCACATGGAGTCCAACGTGGACCAATAGAGCCGCCTT 119
Query 120 GGAGGCAGAAGATGCAGCTTCTGTTTCTTGCTCAGGCCATGGCAGAGCTTATGTGGACGG 179
||||||||||| |||||| |||||||| |||||||||||||||||| |||| ||||||||
Sbjct 120 GGAGGCAGAAGCTGCAGCCTCTGTTTCATGCTCAGGCCATGGCAGATCTTACGTGGACGG 179
Query 180 TCTTGGTGTCCTTGACGGCCATAAACCTCCTTGTGAGTG-CAATAATTGCTACACAGGCA 238
||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct 180 TCTTGGTGTCCTTGACGGCCATAAA---CCTTGTGAGTGTC-ACGATTGCTACACAGGCA 235
Query 239 AAGATTGCTCC-TTCTTTGTAC-CAGATTGTCCTGTCGATGCTGACTCAGGAGACCCTTT 296
||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 236 AAGATTGCTCCGTTC-TTCT-CAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTT 293
Query 297 GTTTTTGGAGCCTTTCTGGATTCGAAACGCAGAGGGAAGTGCGGTTGTTGAGTCAGGATG 356
||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 294 GTTCTTGGAGCCTTTCTGGATTCGAAAGGCAGAGGAAAGTGCGGTTGTTGAGTCAGGATG 353
Query 357 GCACAGGATGAGTTATTCCTATCACGGCTATGGCTTATTTGTGTCGGCAGAGCTTGAGAG 416
|||||||||||||||| | | | |||| |||||||| ||| ||||||||||||||||||
Sbjct 354 GCACAGGATGAGTTATACTTTTAACGGATATGGCTTGTTTATGTCGGCAGAGCTTGAGAA 413
Query 417 GATCATTAGAAAGCTACATAATGTGGTGGGAAATGCAGTTACTGATAACAGATTCATTAT 476
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 414 GATCATTAGAAAGTTACATAATGTAGTGGGAAATGCAGTTACTGATAACAGATTCATAAT 473
Query 477 CTTCGGAACTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCCCAAACAAA 536
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 CTTTGGAGCTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCTCAAACAAA 533
Query 537 TTCATCATCATCATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATATGAACAA 596
| |||| | |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 534 -T--TCAT--T-ATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATTTGTACAA 587
Query 597 AGACCAAGCAGAGTTCTTTAATTCTGCCGATCTCAAGTTTGAAGGAGATGCGTCCGCGTG 656
| | |||||||| |||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 588 ACAACAAGCAGATTTCTTTAATTCTACCAATCTCAAGTTTGAAGGAGATGCGTCTGCGTG 647
Query 657 GAAGAGGAGCGAGCGCAATGATAATATGACACAAGTTATAGAGATAGTGACATCTCCGAA 716
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 648 GAAGAGGAGCGAGCGCAATGATGATATTAAACAAGTTATAGAGATAGTGACATCTCCGAA 707
Query 717 TAATCCAGATGGGAAGCTTAAAAGAGCGGTTCTTGATGGTCCTAATGTCAAATACATTCA 776
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 708 TAATCCAGATGGGAAGCTGAAAAGAGCGGTTCTTGATGGTCCTAATGTGAAATACATTCA 767
Query 777 TGATTATGCTTATTACTGGCCTTATTTTTCACCTATTACACATCCTGTTGATGAAGATTT 836
|||||||||||| |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 768 TGATTATGCTTACTACTGGCCTTATTTTTCACCTATTACACGTCAAGCTGATGAAGATTT 827
Query 837 GAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGACTGGGCATT 896
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 828 GAGCTTGTTCAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGGCTGGGCATT 887
Query 897 AGTAAAAGACAAAGCTGTTTATGAAAAAATGAAAACATATATAATTCTAAGTACTATGGG 956
||||||||| ||| ||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 888 AGTAAAAGAGAAAACTGTTTATGAAAAAATGAAAATATATATAAGTCTAAGTAGTATGGG 947
Query 957 AGTTTCAAAAGACACACAGCTTCATGCTTTGCAGTTGCTTAAAGTAGTGATTGGCGATGG 1016
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 948 AGTTTCAAGAGACACACAGCTTCGTGCTTTGCAGTTGCTTAAAGTAGTGATTGGTGATGG 1007
Query 1017 AGGGGATGAAATATTCAGTTTTGGTTATGGAACCTTGaaaaaaaGATGGGAGATTTTGAA 1076
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGGCAATGAAATATTCCGTTTTGGTTATGGAACCTTGAAAAAAAGATGGGAGATTTTGAA 1067
Query 1077 CAAGATCTTTTCCATGTCCACGCGTTTTTCGCTCCAGACTATCAAACCTCAGTATTGCAA 1136
|||||| ||||||||||| ||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1068 CAAGATTTTTTCCATGTCTACGCGTTTTTCGCTCGAAACTATCAAACCTGAGTATTGCAA 1127
Query 1137 CTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACC 1187
Query 1197 AGAAGACAAAAACTGCTATGAGATTTTCAGAGCGGTGAAGATAACTGGACGCAATGGC-A 1255
|||||||| | |||||||||||||||||| ||||| ||||||||| ||||| ||||| |
Sbjct 1188 AGAAGACACAGACTGCTATGAGATTTTCAAAGCGGCGAAGATAACAGGACGTAATGGGGA 1247
Query 1256 ATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCAGATCACAAGACGACT 1315
| |||||||||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct 1248 AA-TGTTTGGATCGGATGAAAGGTTTGTGCGGCTAAGTCTCATCAGATCACAAGACGACT 1306
Query 1316 TTGATCAGCTTATTGCTATATTGAAGAAGTTTGTCTCCAAGGAAGCTGTCGTAGTTGACT 1375
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 1307 TTGATCAGCTTATTGCAATGTTGAAGAAGTTTGTCTCCAAGGAAGCTGTAGTTGTTGACT 1366
Query 1376 CCGTCT 1381
|| |||
Sbjct 1367 CCATCT 1372
> AT1G34060.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:12396420-12398369 REVERSE
LENGTH=1603
Length=1603
Score = 1567 bits (848), Expect = 0.0
Identities = 1215/1387 (88%), Gaps = 46/1387 (3%)
Strand=Plus/Plus
Query 1 ATGATGCATAACAAGCTACTAGTTGCAGTGTCGATAATCTTGAATCTTC-TATTCACCGT 59
|||||||| || |||||||| || ||| || || |||||||||| || |||||||| |
Sbjct 71 ATGATGCAGAAGAAGCTACTTCTTATAGTATCAATCATCTTGAATC-TCGTATTCACCAT 129
Query 60 TCATATTCTTTATAATAATTCAACCACATGGAGTCCAACGTGGACCGATAGAGCCGCCTC 119
||||||||||||| ||| |||||||||||||| ||||||||||||| | ||||| || |
Sbjct 130 TCATATTCTTTATTATAGTTCAACCACATGGAATCCAACGTGGACCAACAGAGCTGCAGC 189
Query 120 GGAGGCAGAAGA-TGCAGCTTCTGTTTCTTGCTCAGGCCATGGCAGAGCTTATGTGGACG 178
||| |||||| | || ||| ||| |||| ||||||||||| |||||||||| |||||| |
Sbjct 190 GGAAGCAGAA-ACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTTTTGTGGATG 248
Query 179 GTCTTGGTGTCCTTGACGGCCATAAACCTCCTTGTGAGTGCAATAATTGCTACACAGGCA 238
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |
Sbjct 249 GTCTTGGTGTCCTTGACGGCCAGAAACCTCCTTGTGAGTGCAACAATTGCTACATAGGAA 308
Query 239 AAGATTGCTCC-TTCTTTGTAC-CAGATTGTCCTGTCGATGCTGACTCAGGAGACCCTTT 296
||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 309 AAGATTGCTCCGTTC-TTCT-CAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTT 366
Query 297 GTTTTTGGAGCCTTTCTGGATTCGA-AACGCAGAGGGAAGTGCGGTTGTT-GAGTCAGGA 354
||| ||||||||||||||||| ||| || |||||| |||| ||| || || | || |||
Sbjct 367 GTTCTTGGAGCCTTTCTGGATGCGACAA-GCAGAGAGAAGCGCGATT-TTGGTCTCGGGA 424
Query 355 TGGCACAGGATGAGTTATTCCTATCACGGCTAT-GG-CTTATTTGTGTCGGCAGAGCTTG 412
||||||||||||||||| | ||| ||| || || | ||| ||| || | |||||| |
Sbjct 425 TGGCACAGGATGAGTTA-T-ATAT-ACGAAGATGGGACATATGTGTCTC-G-AGAGCTCG 479
Query 413 AG-AGGATCATTAGAAAGCTACATAATGTGGTGGGAAATGCAGTTACTGATAACAGATTC 471
|| ||| |||||||||| || |||| ||| ||||||||||||||||| ||||||||||||
Sbjct 480 AGAAGG-TCATTAGAAAACTTCATAGTGTAGTGGGAAATGCAGTTACAGATAACAGATTC 538
Query 472 ATTATCTTCGGAACTGG-AGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCCCA 530
| ||||| ||| |||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 539 GTAATCTTTGGATCTGGTA-CCACACAATTGCTTGCAGCAGCTGTTCATGCCTTGTCTTT 597
Query 531 AACAAATTCATCA-TCATCATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATA 589
||||| |||||| | |||||| ||| |||||||| |||||||| |||||||||| ||
Sbjct 598 GACAAACTCATCAGT-ATCATCACCTGCAAGACTTCTGACTTCTATTCCATACTATGCTA 656
Query 590 TGAACAAAGACCAAGCAGAGTTCTTTAATTCTGC-CGATCTCAAGTTTGAAGGAGATGCG 648
|| |||| |||||||||||||| ||| |||| || | ||||||||||||||||| |||||
Sbjct 657 TGTACAAGGACCAAGCAGAGTTTTTTGATTCAGCAC-ATCTCAAGTTTGAAGGAAATGCG 715
Query 649 TCCGCGTGGAAG-AGGAGC-GAGCGCAATGATAATATGACACAAGTTATAGAGATAGTGA 706
|| ||||||||| | |||| || |||||||||||||| ||||||||||||||| | ||||
Sbjct 716 TCTGCGTGGAAGCA-GAGCGGA-CGCAATGATAATATCACACAAGTTATAGAGGTGGTGA 773
Query 707 CATCTCCGAATAATCCAGATGGGAAGCTT-AAAAGAGCGGTTCTTGATGGTCCTAATGTC 765
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 774 CATCTCCGAATAATCCAGATGGGAA-ATTGAAAAGAGCGGTTCTTGATGGTCCTAATGTG 832
Query 766 AAATACA-TTCATGATTATGCTTATTACTGGCCTTATTTTTCACCTATTACACATCCTGT 824
||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 833 AAA-ACACTTCATGATTATGCTTATTACTGGCCTCATTTCTCACCTATTACACATCCAGT 891
Query 825 TGATGAAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATT 884
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 892 TGATGAAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGTTCAAGATT 951
Query 885 CGACTGGGCATTAGTAAAAGACAAAGCTGTTTATGAAAAAATGAAAACATATATA-ATTC 943
|| |||| ||| ||||| ||||||||| |||||||||||||| | | || |||| ||
Sbjct 952 CGGGTGGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGATAGATTTATACGTT- 1010
Query 944 TAAGTACTATGGGAGTTTCAAAAGACACACAGCTTCATGCTT-TGCAGTTGCTTAAAGTA 1002
||| || |||||||||||| ||||| ||||||||||||| || | |||||||| ||||||
Sbjct 1011 TAACTAGTATGGGAGTTTCTAAAGAAACACAGCTTCATG-TTCTTCAGTTGCTCAAAGTA 1069
Query 1003 GTGA-TTGGCGATGGAGGGGATGAAATATTCAGTTTTGGTTATGGAACCT-TGaaaaaaa 1060
|| | |||| |||||||| |||| |||||||||||||||||||||| || |||| ||||
Sbjct 1070 GT-AGTTGGTGATGGAGGCAATGAGATATTCAGTTTTGGTTATGGAA-CTGTGAAGAAAA 1127
Query 1061 GATGGGAGATTTTGAACAAGATCTTTTCCATGTCCACGCGTTTTTCGCTCCAGACTATCA 1120
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1128 GATGGGAGACACTGAACAAGATCTTCTCCATGTCCACGCGTTTCTCGCTCCAGACAATCA 1187
Query 1121 AACCTCAGTATTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGG 1180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AACCTGAGTACTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGG 1247
Query 1181 TGAAGTGTGAGAGACCAGAAGACAAAAACTGCTATGAGATTTTCAGAGCGGTGAAGATAA 1240
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1248 TGAAGTGTGAGAGACCAGAAGACACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAA 1307
Query 1241 CTGGACGCAATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCA 1300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CAGGACGCAATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCA 1367
Query 1301 GATCACAAGACGACTTTGATCAGCTTATTGCTATATTGAAGAAGTTTGTCT-CCA--AGG 1357
|||||||||| ||||||||||||||||||||||| ||||||||||| || | ||| |||
Sbjct 1368 GATCACAAGATGACTTTGATCAGCTTATTGCTATGTTGAAGAAGTTAGTTTACCATGAGG 1427
Query 1358 AAGCTGT 1364
||| |||
Sbjct 1428 AAGATGT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5