BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473563
Length=3290
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34110.1 | Symbols: | Leucine-rich receptor-like protein ki... 5055 0.0
> AT1G34110.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr1:12417176-12421523 REVERSE LENGTH=3651
Length=3651
Score = 5055 bits (2737), Expect = 0.0
Identities = 3132/3320 (94%), Gaps = 38/3320 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTGAAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 335 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTCAAGAGA 394
Query 61 CCATCACCATCACTTTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CCATCACCATCACTCTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 454
Query 121 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 514
Query 181 AACCTGTCTTCAATCCCTGacctctcttctctctcctctctgcagttcctaaacctctcc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 515 AACCTGTCTTCAATCCCTGACCTCTCTTCTCTCTCCTCTCTACAGTTCCTAAACCTCTCC 574
Query 241 tccaccaacctctctggcccaatccctcctTCATTTGGAAAACTTACCCACCTAAGGCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TCCACCAACCTCTCTGGCCCAATCCCTCCTTCATTTGGAAAACTTACCCACCTAAGGCTT 634
Query 301 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCACCTCTCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 635 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCGCCTCTCT 694
Query 361 TCTCTCCAGTTCCTTATCTTGAACGCCAACAAGCTCTCTGGCTCAATCCCTTCACAGATT 420
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 695 ACTCTCCAGTTCCTTATATTGAACGCCAACAAGCTCTCAGGTTCAATCCCTTCACAGATT 754
Query 421 TCAAATCTATCTGCCTTGCAAGTGCTTTGTCTTCAGGACAATCTGTTGAATGGTTCGATT 480
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 755 TCGAATCTATTTGCCTTGCAAGTGCTTTGTCTTCAAGACAATCTGTTGAATGGTTCGATT 814
Query 481 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGAGGTAACCCTAAT 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 815 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGTGGTAACACTAAT 874
Query 541 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 934
Query 601 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 994
Query 661 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 1054
Query 721 TCAGAGCTCAGAAACTTGTATTTGCACATGAACAAGCTCACTGGATCCATCCCAAAGGAA 780
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1055 TCAGAGCTCAGGAACTTGTATTTGCACATGAACAAGCTCACTGGATCAATCCCAAAGGAA 1114
Query 781 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTTTGGGGGAATTCTTTATCTGGGGTC 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1115 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTATGGGGGAATTCTTTATCTGGGGTC 1174
Query 841 ATCCCACCAGAGATCTCCAACTGTTCTTCCCTTGTGGTGTTTGATGTTTCGGCCAACGAT 900
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1175 ATCCCACCAGAGATTTCCAACTGTTCTTCCCTCGTGGTGTTTGATGTTTCAGCTAACGAT 1234
Query 901 CTGACCGGTGAGATTCCTGGAGATTTAGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 960
|| || || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1235 CTAACTGGCGATATTCCTGGAGATTTGGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 1294
Query 961 TCTGATAATATGTTCACCGGTCAGATTCCTTGGGAATTAAGTAACTGTTCCAGCCTCATT 1020
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1295 TCTGATAATATGTTTACCGGTCAGATTCCTTGGGAGTTAAGCAACTGTTCCAGCCTCATT 1354
Query 1021 GCTCTGCAGCTGGATAAGAACAAGTTATCAGGCTCCATACCATCCCAAATCGGAAACCTC 1080
||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1355 GCTCTTCAGCTGGACAAGAACAAGTTATCAGGCTCCATACCCTCACAAATTGGAAACCTC 1414
Query 1081 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCTATTTCAGGAACAATTCCGTCTTCT 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1415 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCAATTTCAGGAACAATTCCGTCTTCT 1474
Query 1141 TTTGGCAACTGCACAGACCTAGTTGCCCTTGACCTCTCTAGGAACAAGCTAACAGGAAGA 1200
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1475 TTTGGCAACTGCACAGACCTAGTGGCCCTGGACCTCTCTAGGAACAAGCTAACAGGAAGA 1534
Query 1201 ATCCCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTGCTTCTAGGAAACTCC 1260
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1535 ATACCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTCCTTCTAGGGAACTCC 1594
Query 1261 TTATCCGGTGGATTACCAAAGAGCGTATCGAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1320
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1595 TTATCCGGTGGATTACCAAAGAGCGTAGCAAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1654
Query 1321 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1714
Query 1381 TTTCTTGATCTCTACATGAACCATTTCTCTGGTGGGCTTCCTTATGAGATCTCTAACATC 1440
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1715 TTTCTTGATCTCTACATGAACCATTTCTCCGGTGGGCTTCCTTACGAGATCTCTAACATC 1774
Query 1441 ACTGTCCTTGAGCTCTTAGATGTGCACAACAACTACATAACTGGAGATATTCCTGCTAAG 1500
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 1775 ACTGTCCTTGAGCTCTTAGATGTCCACAACAACTACATCACCGGAGATATTCCTGCTCAG 1834
Query 1501 TTAGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACCGGAAAC 1560
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1835 TTGGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACAGGAAAC 1894
Query 1561 ATACCGCTGAGTTTTGGTAACTTAAGTTACTTAAACAAGCTGATCCTCAACAACAATCTC 1620
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1895 ATACCGCTGAGTTTTGGGAACCTAAGCTACTTAAACAAGCTGATCCTCAACAACAATCTC 1954
Query 1621 CTCACTGGCCAAATCCCTAAATCCATCAAGAATCTGCAAAAGCTTACACTTCTTGATCTT 1680
|||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1955 CTCACTGGTCAAATCCCAAAATCTATCAAGAATCTACAAAAGCTTACACTTCTTGATCTT 2014
Query 1681 AGCTTCAACAGTTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTAACAAGCTTGACT 1740
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2015 AGCTACAACAGCTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTCACAAGCTTAACT 2074
Query 1741 ATAAATCTGGATTTAAGCTACAACACCTTCACTGGAGCCATCCCGGAAACCTTCTCCGGC 1800
||||| || || |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2075 ATAAACCTCGACTTAAGCTACAACACCTTCACTGGAAACATCCCGGAAACCTTCTCCGAC 2134
Query 1801 CTCACACAGCTACAATCACTGGACCTCTCACGAAA-TATGCTTCACGGCGACATCAAAGT 1859
|||||||||||||||||||| ||||||||| | || | ||| |||||||||||||||||
Sbjct 2135 CTCACACAGCTACAATCACTCGACCTCTCAAGCAACTC-GCTACACGGCGACATCAAAGT 2193
Query 1860 CCTCGGTTCACTCACAAGCCTAGCGTCACTCAACATATCCTGCAACAACTTCTCTGGTCC 1919
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 2194 CCTCGGTTCACTCACAAGCCTAGCTTCACTAAACATCTCCTGCAACAACTTCTCAGGTCC 2253
Query 1920 AATCCCAGCTACACCGTTCTTCAAAACAATCTCCGCAACTTCATACCTCCAAAACACAAA 1979
||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2254 AATCCCATCAACACCATTCTTCAAAACAATCTCCACAACATCATACCTCCAAAACACAAA 2313
Query 1980 CCTCTGCCATTCACTCGACGGCATTACTTGCTCATCACGCAATAGACAAAACAACGGAGT 2039
||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||
Sbjct 2314 CCTCTGCCATTCACTAGACGGCATCACTTGCTCATCACACACCGGACAAAACAACGGAGT 2373
Query 2040 CAAATCCCCAAAGATCGTAGCTTTAATCGCGGTAATCCTTGCTTCAATCACAATCGCCAT 2099
||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||
Sbjct 2374 AAAATCCCCAAAGATCGTAGCTTTAACCGCAGTAATCCTCGCATCAATCACAATCGCAAT 2433
Query 2100 CCTCGCAGCCTGGCTTCTCCTCTTACGAAACAATCACCGCTACAA--CA-CTCAAAAATC 2156
||||||||||||||||||| ||||||||||||| |||| |||||| || ||||||| ||
Sbjct 2434 CCTCGCAGCCTGGCTTCTCATCTTACGAAACAACCACCTCTACAAAACATCTCAAAACTC 2493
Query 2157 ATCGTCTTCTTCACCATCAACAGCAGAAGATTTCTCATACCCATGGACATTCATACCCTT 2216
| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2494 --C-TCTTCCTCTCCATCAACAGCAGAAGATTTCTCATACCCGTGGACATTCATACCATT 2550
Query 2217 CCAAAAACTCGGTATCAGCGTCAACAACATCGTCAATTGCTTAACAGACGAAAACGTGAT 2276
||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||| ||
Sbjct 2551 CCAAAAACTCGGTATCACCGTCAACAACATCGTCACTTCCTTAACCGACGAAAACGTAAT 2610
Query 2277 CGGCAAGGGATGTTCAGGGATCGTTTACAAAGCCGAAATACCAAACGGAGAGATCGTGGC 2336
||| || ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||
Sbjct 2611 CGGAAAAGGATGTTCAGGAATCGTATACAAAGCCGAAATCCCCAACGGAGACATCGTAGC 2670
Query 2337 AGTGAAGAAGCTTTGGAAAACTAAAGACAACGACGAAGGAGGAGGAGAATCAACAATAGA 2396
||||||||| || |||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 2671 AGTGAAGAAACTCTGGAAAACTAAAGACAACAACGAAG-A--AGGAGAATCAACAATAGA 2727
Query 2397 TTCATTCGCAGCGGAGATTCAGATTCTTGGTAGCATCAGACACAGAAACATTGTGAAGCT 2456
||||||||| || |||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 2728 TTCATTCGCTGCAGAGATTCAGATTCTCGGTAACATCAGACACAGAAACATAGTGAAGCT 2787
Query 2457 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTGCTATACAATTATTTCCCTAATGG 2516
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 2788 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTTCTATACAATTACTTCCCTAACGG 2847
Query 2517 GAATCTTCAACAGTTGTTGCAAGGAAATCGGAACTTGGATTGGGAAACACGTTACAAGAT 2576
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2848 GAATCTACAACAGTTGTTGCAAGGAAATCGAAACTTGGATTGGGAAACACGTTACAAGAT 2907
Query 2577 TGCTATTGGATCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2636
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2908 TGCGATTGGAGCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2967
Query 2637 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2968 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 3027
Query 2697 GGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAATGCTATGTCTCG 2756
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3028 TGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAACGCCATGTCTCG 3087
Query 2757 TGTTGCTG------A---ATAC---G-----GA-TAC--A--C--GATGAACATAACAGA 2792
|||||||| | |||| | || ||| | | |||||| ||||||||
Sbjct 3088 TGTTGCTGGTTCTTATGGATACATCGCACCAGAATACGGATACACGATGAATATAACAGA 3147
Query 2793 GAAGAGTGACGTATACAGCTACGGCGTCGTTTTATTAGAGATTCTTAGTGGCCGGAGCGC 2852
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3148 GAAGAGTGACGTGTACAGCTACGGCGTCGTTTTATTAGAGATTCTAAGTGGCCGGAGCGC 3207
Query 2853 CGTGGAGCCACAAATCGGCGACGGACTTCACATAGTAGAATGGGTGAAGAAGAAGATGGG 2912
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 3208 CGTGGAGCCACAAATCGGCGACGGGCTTCACATAGTGGAATGGGTGAAGAAGAAGATGGG 3267
Query 2913 AAGCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAAGGATTACCAGATCAGAT 2972
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3268 AACCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAGGGATTACCAGATCAGAT 3327
Query 2973 AGTTCACGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3032
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3328 AGTTCAAGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3387
Query 3033 GGAGAGACCAACGATGAAAGAAGTTGTGACATTGTTAATGGAGGTTAAGTGTAGTCCTGA 3092
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 3388 GGAGAGACCAACGATGAAGGAAGTTGTGACGTTGTTAATGGAGGTTAAGTGTAGTCCTGA 3447
Query 3093 AGAATGGGGTAAAACATCTCAGCCTCTTATAAAGCCTTCTTCTTCATAACCAATGGTGAT 3152
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 3448 AGAATGGGGTAAAACATCTCAGCCTCTTATCAAGCCTTCTTCTTCATAACCTATGGTGCT 3507
Query 3153 TGTGTTTTCTTGTTCTTGTTTTTTGATTT-AGGTCAAATTTGGTTGAGAGGTTTTGATTT 3211
||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 3508 TGTGTTT-CTTGTTCTTGTTTTTTTTTTTTAGGTCAAATTTGGTTGAGTGGTTTTGATTT 3566
Query 3212 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTCAGAT-TTTGGAATCAT 3270
||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 3567 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTGAGCTCTTTGGAATCAA 3626
Query 3271 TTAGAATTGGTTACAACTTT 3290
||||||||||||||||||||
Sbjct 3627 TTAGAATTGGTTACAACTTT 3646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163694735009
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5