BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473569
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34150.1 | Symbols: | Pseudouridine synthase family protein... 2510 0.0
> AT1G34150.1 | Symbols: | Pseudouridine synthase family protein
| chr1:12435954-12439499 FORWARD LENGTH=1735
Length=1735
Score = 2510 bits (1359), Expect = 0.0
Identities = 1564/1659 (94%), Gaps = 30/1659 (2%)
Strand=Plus/Plus
Query 1 CCGTCGTTGAACTCTTTTCAACCGGCGTCGATTCTCGTTTCGT---CG-C-C----G--- 48
||||||||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 3 CCGTCGTTGAACTCTTTTCAACCGGCGTCGAATCTCGTTTCGTCGCCGTCTCGTTGGCTC 62
Query 49 -----ACCGGCGTCGATTCTCGTTTCGTCGCCGTCATTCGTGTATCCGTCTTAAACTCCG 103
||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 63 TTTTCACCGGCGTCGAATCTCGTTTCGTCGCCGTCATTCGTGTATCCATCTTAAAATTCG 122
Query 104 CCGCTGATTCATGACTATCTCCGACGGAAAATCCGACCCCAGCGGCGATGACCGAGACTC 163
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 123 AGGCTGATTCATGACTATCTCCGACGCAAAATCCGATCCCGGCGGCGATGACCGAGACTC 182
Query 164 TGAAATCGCTAAAGAAACCGAATTAGTGTTTCTCCGTAATCGCGTGAAGGAGTTAGAAGC 223
||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 183 TGAAATCGCCAAAGAAACAGAACTAGTGTTTCTCCGTAATCGCGTCAAGGAGTTAGAAGT 242
Query 224 GGAAAATGCTAAGTTGTTGTCTCAGGTTTCAAGCTGCCAATACCAACAGATGGAAGTGAA 283
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 GGAAAATGCTAAATTGTTGTCTCAGGTTTCAAGCTGCCAATGCCAACAGATGGAAGTGAA 302
Query 284 GCATGATCGGTCAGTGTCAGATTCTAGTAGCTTAGTTAGGAGAAGGAGAGTTAGGAAAGG 343
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 303 GCATGATCGGTCATTGTCAGATTCCAGTAGCTTAGTTAGGAGAAGGAGAGTTAGAAAAGG 362
Query 344 AGATAAGAATAGTATACCGAGTCATCTTATCTCGAAGAGATATGTTGCACTAAAAATCAT 403
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 363 AGATAAGAATAGTATACCGAGTCATCTTATCTCAAAGAGATATGTTGCACTCAAAATCAT 422
Query 404 GTATTTTGGTAAGAGATTTTACGGTTTTTCGGCTGAAGCACAAATGGAACCAAGTATTGA 463
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 423 GTATTTTGGTAAGAGATTTTATGGATTTTCGGCTGAAGCACAAATGGAACCAAGTATTGA 482
Query 464 GTCAGAAGTTTTTAAAGCACTTGAAAGGACACGGCTTTTAGTTGGGGACAAGAAAGATTC 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GTCAGAAGTTTTTAAAGCACTTGAAAGGACACGGCTTTTAGTTGGGGACAAGAAAGATTC 542
Query 524 TTGTTACTCGAGATGTGGAAGAACAGATAAAGGTGTTTCGTCCACAGGGCAGGTGATTGC 583
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 TTGTTACTCGAGATGTGGGAGAACAGATAAAGGTGTTTCCTCCACAGGGCAGGTGATTGC 602
Query 584 TTTGTTCTTAAGATCCAGACTGAAGTCACCTCCTGGAGACTCTAAAGCCCAAGTTAATGG 643
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 TTTGTTTTTAAGATCCAGACTGAAGTCACCTCCTGGAGACTCTAAAGCCCAAGTGAATGG 662
Query 644 GAAAACGGGTGAAAGACCAGAATATGATTATGTAAGAGTTCTAAATCGTGCTCTCCCTGA 703
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GAGAACGGGTGAAAGACCAGAATATGATTATGTAAGAGTTCTAAATCGTGCTCTCCCTGA 722
Query 704 TGACATCCGAGTTATTGGATGGTCTCCTGCTCCTGTTGACTTTCATGCAAGGTTTAGTTG 763
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 723 TGACATCCGAGTTATTGGATGGTCTCCTGCTCCTATCGACTTTCATGCAAGGTTTAGTTG 782
Query 764 CTATGCTAGAGAATACAAATACTTTTTCTGGAGACAGAACCTGAATCTTTCGGCCATGGA 823
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 783 CTATGCTAGAGAATACAAATATTTTTTCTGGAGGCAGAACCTGAATCTTTCGGCCATGGA 842
Query 824 CATTGCCGGGAAGAAGTTCATTGGGGAGCATGATTTCAGGAACTTCTGCAAGATGGACGT 883
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 843 CTTTGCCGGGAAGAAGTTCATTGGGGAGCATGATTTCAGAAACTTCTGCAAGATGGATGT 902
Query 884 GGCAAATGTCCATTGCTATACACGACGTGTTACTTTCTTTGAAGTCTCTCCTTGTCAAAA 943
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 903 GGCAAATGTACATTGCTATACACGGCGTGTTACTTTCTTTGAAGTCTCCCCTTGTCAAAA 962
Query 944 TAGTCACGAGGGTGATCAGCTTTGCACATTTACAATGAGAGGCAGTGCTTTCCTGTGGCA 1003
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAGTCATGAGGGTGATCAGCTTTGCACATTTACAATGAGAGGCAGTGCTTTCCTGTGGCA 1022
Query 1004 CCAGATCCGCTGCATGGTCGCCGTGCTATTCATGATTGGGCAGGGCGTTGAATCAGTTGA 1063
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CCAGATCCGCTGTATGGTCGCCGTGCTATTCATGATTGGGCAGGGCGTTGAATCAGTTGA 1082
Query 1064 TGTGATAGATACATTGTTGGACACGAAGAAAACGCCAAGAAAACCTCAATACCTCTTGGC 1123
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1083 TGTGATAGATACATTGTTGGACACAAAGAAAACGCCAAGAAAACCTCAATACCTATTGGC 1142
Query 1124 CTCAGAGATACCCTTAGTCCTCCGTACATGTGAATTCGAAAATGTTGACTTCATATGTTC 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CTCAGAGATACCCTTAGTCCTCCGTACATGTGAATTCGAAAATGTTGACTTCATATGTTC 1202
Query 1184 TCCAGGCGCTGCAGAGTCACTTCGGTCTCATTTCAAGAATGAATCGTTGACATACCAATT 1243
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1203 TCCAGGTGCTGCAGAGTCACTGCGGTCTCATTTCAAGAATGAATCATTGACATACCAATT 1262
Query 1244 AGAGTCTGTGATTTATCAGGAGGCTCTCCGGAACTGTTTACCTCTAAGCAA---TGTTTC 1300
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1263 AGAGTCTGTAATTTATCAGGAGGCTCTCCGAAACTGTTTACCTCTAAGCAACAATGTTTC 1322
Query 1301 AACAGAGGAAAGCTCATGCAATGGCGTAGAGAAAAAGAAGAAAAGAGCAGAACACGTTCC 1360
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1323 AACAGAGGAAAGCTCATGCAATGGCGTAGAAAAAAAGAAGAAAAGGGCAGAACACGTTCC 1382
Query 1361 CCTATTATCTCGACCAACTGAGCCGTCGTACGAAGAACGAGCTGCGAAACTGAAACCAAG 1420
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1383 CCTGTTATCTCGACCAACTGAGCCGTCGTATGAAGAACGAACTGCGAAACTGAAACCAAG 1442
Query 1421 GAAACAAGAAACTT-GTCATGTGTAGTGTAAGGGGGCA-TCTCGGCGCGGCGACCATCAA 1478
|||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1443 GAAAGAAGAAACTTTGGCATGTGTAGTGTAAGGGGGCAATCTCGGCG-----ACCATCAA 1497
Query 1479 AAGAATAGAGAGGCTTTGAGTCTGTTGTTCGTAGCAGTTGATTGTTTGAATTGATTACGT 1538
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 1498 AAGAATAGAGAGGCTTTGAGTCTGTTGTTTGTAGCAGTTGATTGTTTGCATTGATTACAT 1557
Query 1539 ATACAGTAATAAT-TACTAATGTATGGTTTAAATATTTTTCTAAGAAATTAAATTT-TCG 1596
||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| | |
Sbjct 1558 ATACAGTAATAATATACTAATATATGGTTTTAATATTTCTCTAAGAAATTAAATTTCT-G 1616
Query 1597 TTAGAGCTCGTGTCTCTAACTTATATTATATAAAACAAA 1635
|||||||| || ||||||||||||||| ||| |||||||
Sbjct 1617 TTAGAGCTGGTCTCTCTAACTTATATTGTATGAAACAAA 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5