BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473574
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34220.1 | Symbols: | Regulator of Vps4 activity in the MVB... 3511 0.0
> AT1G34220.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:12462849-12466000 REVERSE LENGTH=2292
Length=2292
Score = 3511 bits (1901), Expect = 0.0
Identities = 2142/2259 (95%), Gaps = 14/2259 (1%)
Strand=Plus/Plus
Query 1 GATCTTTGTAATCTTCTCTGTTCCAAAGCTTCGCGATCGATCTTCAGTG---ATCAAATC 57
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 9 GATCTTTGTAATCTTCTCTGTTCCAAAGCTTCGCGATCGATCTTCAGTGATCATCAAATC 68
Query 58 GTAACCAGT-AAAAATCGATCATGTCGATGCTCGATTCCTTCTTCAATAAGGGTTTCAAA 116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GTAACCAGTAAAAAATCGATCATGTCGATGCTCGATTCCTTCTTCAATAAGGGTTTCAAA 128
Query 117 GCTGCAAAATGCAAAACCTTGCTCAAGTTAACGATCCCTAGGATTAAGCTAATCAGGAAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GCTGCAAAATGCAAAACCTTGCTCAAGTTAACGATCCCTAGGATTAAGCTAATCAGGAAT 188
Query 177 AGAAGAGAAGCTCAGATTAAGCAAATGCGTCGTGAAATTGCTAAGCTTCTTGAGACTGGT 236
||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 189 AGAAGAGAAGCACAGATTAAACAAATGCGTCGTGAAATTGCAAAGCTTCTCGAGACTGGT 248
Query 237 CAAGAAGCTACTGCTCGAATTCGGGTTGAGCATATTATAAGGGAAGAGAAGATGATGGCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAAGAAGCTACTGCTCGAATTCGGGTTGAGCATATTATAAGGGAAGAGAAGATGATGGCT 308
Query 297 GCTCAAGAGATTCTTGAGCTCTTCTGTGAACTCATCGCTGTTCGTCTTCCGATTATTGAG 356
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 GCTCAAGAGATCCTTGAGCTCTTCTGTGAACTCATTGCTGTTCGTCTTCCGATTATTGAG 368
Query 357 GCACAAAGGGAATGTCCTTTGGATCTAAAAGAAGCGATATCAAGTGTATGTTTTGCTGCG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GCACAAAGGGAATGTCCTTTGGATCTAAAAGAAGCGATATCAAGTGTATGTTTTGCTGCG 428
Query 417 CCGAGGTGCTCTGACTTGACAGAGCTGCAGCAGGTCCAGATACTATTTGTTTCCAAGTAT 476
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 429 CCGAGGTGCTCTGACTTGACAGAGCTGCAGCAGGTTCAGATACTGTTTGTATCTAAGTAT 488
Query 477 GGAAAGGAATTTGTTGCAGCTGCATCTGAGCTCAAGCCGGATTCTGGTGTCAATCGTAAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GGAAAGGAATTTGTTGCAGCTGCATCTGAGCTCAAGCCGGATTCTGGTGTCAATCGTAAG 548
Query 537 ACTGAATCGCTAATATTCATTGCGTGGTTCAGTCTAGTAGAAACAAGATATTTGTTCATG 596
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 549 ACTGAATCGCTGATATTCATTGCATGGTTCAGTCTAGTAGAAACAAGAGATTTGTTCATG 608
Query 597 TTTTTGTACTTTTCCAAATCAATTTTACAGTTGGTGGAGTTGCTGTCTGTGCGTGCACCT 656
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 TTTTTGTATTTTTCCAATTCAATTTTACAGTTGGTGGAGTTGCTGTCTGTACGTGCACCT 668
Query 657 TCCCCAGAAATTAAACTGAAACTTCTCAAGGAAATTGCAGAAGAACATGAACTTGATTGG 716
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TCTCCAGAAACTAAACTGAAACTTCTCAAGGAAATTGCAGAAGAACATGAACTTGATTGG 728
Query 717 GACCCTGCTTCTACAGAAACTGATCTCTTCAAATCGCATGAAGATCTCCTTGATGGACCA 776
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 729 GACCCTGCTTCTACAGAAACTGATCTCTTCAAATCTCATGAAGATCTCCTTGATGGACCA 788
Query 777 AAACAATTTGGTGGGGGATCTAAGCTGCCGTTACCGGAGGAACAAAATGAAGGGACACAT 836
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 789 AAACAATTTGGTGGGGGATCTAAGCTGCCGTTACCAGAGGAACAAAATGAAAAGACAAAT 848
Query 837 GTGACATCTCTTTCAGCGCCAAAGGAGAAATCTGATTCTGACTCAGAGTATGATATATTG 896
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TTAACATCTCTTTCAGCGGCAAAGGAGAAATCTGATTCTGACTCAGAGTATGATATATTG 908
Query 897 GACTTTCCCGAGGTTCCAAATGTCTTGCTGCGACCAACTCTTGGTGCTACCCCTGTAAAT 956
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 909 GACTTTCCCGAGGTTCCAAATGTCTTGCTGCGACCAACTCCTGGTGCTACCTCTGTAAAT 968
Query 957 GCACCGGATGCAGCGAAATCTGCCAGTTATGAACATACCTCTCATGACTTGCCCTTTGAT 1016
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 969 GCACCGGATGCAGCGAAATCAGCCAGTTATGAACATACCTCTCACGACTTGCCCTTTGAT 1028
Query 1017 TCAGAGAAAGCAGGAGTCGAGAAAACAGCTTCTAAAAGAGGTGATCATCCTGCAAAAGCG 1076
|||||||| ||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||
Sbjct 1029 TCAGAGAATGCAGGAGTCGAAAAAACGGCTTCCAAAAGAGATGAACATCCTGCAAAAGC- 1087
Query 1077 AA-CAAAACTGTCGTTGAAGGCCAACAATCTTCACCCATTGTGATGGAATCTTTCGAAAG 1135
|| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1088 AAGCAAAACTGTCGTGGAAGGCCAACAATCTTCACCCATTCTGATGGAATCTTTCGAAAA 1147
Query 1136 GAAAAATTATTCTCCGCCATCCATTGATGCAGTAGGGCCCTTTCCTACAAAAGAGAGTGG 1195
||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1148 GAAGAATTACTCTCCGCCATCCATTGATGCAGTAGGGCCCATCCCTACAAAAGAGAGTGG 1207
Query 1196 TGCTTCGAGAGATGCTCCAAGGAAAATATCCGATGGAGATTTGCAGGATGTCTTAACGGC 1255
|||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1208 TGCTTCCAGAGATACTCCAAGGAAAATATCCGATGGAGACTTGCAGGATGTCTTAATGGC 1267
Query 1256 TGCTCAAGCTGCTGCTGACTCAGCGGAACGTGCAGCAGCAGCTGCCCGTTCAGCTGCAAG 1315
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 1268 TGCTCAAGCTGCTGCTGACTCAGCAGAACGTGCAGCATCAGCTGCCCGCTCAGCTGCAAG 1327
Query 1316 CCTGGCACAACTCAGAATCAACGAGCTTACCAGGAAGACTTCTGATCAGTCTCCAGAAAG 1375
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1328 CCTGGCACAACTCAGAATCAACGAGCTTACCAGGAAGACTTCTGATCAGTATCCAGAAAG 1387
Query 1376 TCCGTCTGAGAACCCTTTCCATGCTCCCTCAATGGGAAACCTTCAATTTGATCATCAGAA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TCCGTCTGAGAACCCTTTCCATGCTCCCTCAATGGGAAACCTTCAATTTGATCATCAGAA 1447
Query 1436 TTCTTCGGGCAGCAGTAGCGGAGATCTTACAGAGCTCCAGAGAGCAGAAACTTCGTCACT 1495
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TTCTTCGGCCAGCAGTAGCGGAGATCTTACAGAGCTCCAGAGAGCAGAAACTTCGTCACT 1507
Query 1496 TTTCACCTCTGAGAAGAACAACCAACAGCCACAGAGACACTCTTCAATGGAAAAACCGCA 1555
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1508 TTTCAACTCTGAGCAGAACAACCAACAGCCACAGACACACTCTTCAATGGAAAAACCGCA 1567
Query 1556 GTTTGAACGTCAGAACTCATCATTTAGTAGCTATGGCGATCTTACGCCACAGAGATTCCC 1615
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1568 GTTTGATCGTCAGAACTCATCATTCAGTAGCTATGGCGATCTTACCCCACAGAGATTCCA 1627
Query 1616 TTCAATGGAAAGACCGCAGTTTGATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1675
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1628 TTCAATGGAAAAACCACAGTTTGATCATCAGAACTCATCAGGCAGCAACTATGACGATCT 1687
Query 1676 TACACCACAGAGATTC-CTGTCAATGGAGAAACCGCAGTTTGATCATCAGAACTCATCAG 1734
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1688 TACACCACAGAGATTCTC-GTCATTGGAGAAACCGCAGTTTGATCATCAGAACTCATCAG 1746
Query 1735 CCAGCAACTATGACGATCTTACACCACAGAGATTCCCGTCATTTGAAAAACCGCAGTTTG 1794
||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||
Sbjct 1747 GCAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGGAGAAACCGCAGTTTG 1806
Query 1795 ATCATCAGAACTCCTCAGTCAGAAGCTATGGCGATCTTCCAGATCTCCAAAGACCAGAGA 1854
||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1807 ATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCTGCCAGAGCTCCAAAGGCCAGAGA 1866
Query 1855 CTTCATTGCTTGACAGACTCAGCCCTGACCAGGACCACCAGCAAATGAGACTGCCTTCAA 1914
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1867 CTTCACCACTTGACAGACTCAGCCCTGACCAGGACCATCAGCAAATGAGACTGCCTTCAA 1926
Query 1915 TGGAAGATGATCCCTATTATTCATACCCTAATCTGTTCACATCGCAGAAGCCTGATCGCT 1974
||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1927 TGGAAGATGATCCCTATTACTCATACCCTAATCTCTTCACATCGCAGAAGCATGATCCCT 1986
Query 1975 CTTTTGGCTCTCATTCATTCTCAGACAATACAAGACCTGCTCATGATTCTTGACTCTTAC 2034
| | |||||||||||| |||||||||||||||||||| || |||||||| ||| ||||||
Sbjct 1987 CATCTGGCTCTCATTCGTTCTCAGACAATACAAGACCCGCCCATGATTCGTGATTCTTAC 2046
Query 2035 CAGGCATATGTTATAATGCAAGCTTGGTGttttttttCAGTGTGTTTCACTTCTGTTGTT 2094
| | |||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 2047 CTG-CATATGTTATAATGCAAGCTTGGTGTTTTT---CAGTGTGTTTCACTTGTGCTGTT 2102
Query 2095 CCTTCTCTTGCGGAACAAAGAGCTCAAAATGtttttttGAACAGCCTTTTCTTCCTCTTT 2154
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2103 CCTTCTCTTGCGGAACAAAGAGCTCAAAATGTTTTTTGGAATAGCCTTTTCTTCCTCTTT 2162
Query 2155 ATTCAGTGGAAGACATATGTAATGTATAGAACTTTGTGTACGTGATTATGTTTAATT-AC 2213
|| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 2163 ATCCAGTGGAAGACATATGTAATGTATAGAACTTGGTGTTTGTGATTATGTTTAATTTA- 2221
Query 2214 AAGGCCTTGGTTTGCTCAAGAATTGAATTACGATTGCTG 2252
||||||||||||| | |||||| ||||| | || |||||
Sbjct 2222 AAGGCCTTGGTTTTCACAAGAAATGAATGAAGAATGCTG 2260
Score = 291 bits (157), Expect = 3e-77
Identities = 209/234 (89%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1601 GCCACAGAGATTCCCTTCAATGGAAAGACCGCAGTTTGATCATCAGAACTCATCAGCCAG 1660
|||||||| | | |||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 1535 GCCACAGACACACTCTTCAATGGAAAAACCGCAGTTTGATCGTCAGAACTCATCATTCAG 1594
Query 1661 CAACTATGACGATCTTACACCACAGAGATTCC-TGTCAATGGAGAAACCGCAGTTTGATC 1719
| ||||| ||||||||| ||||||||||||| | |||||||| ||||| ||||||||||
Sbjct 1595 TAGCTATGGCGATCTTACCCCACAGAGATTCCAT-TCAATGGAAAAACCACAGTTTGATC 1653
Query 1720 ATCAGAACTCATCAGCCAGCAACTATGACGATCTTACACCACAGAGATTCCCGTCATTTG 1779
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1654 ATCAGAACTCATCAGGCAGCAACTATGACGATCTTACACCACAGAGATTCTCGTCATTGG 1713
Query 1780 AAAAACCGCAGTTTGATCATCAGAACTCCTCAGTCAG-AAGCTATGGCGATCTT 1832
| |||||||||||||||||||||||||| |||| ||| || ||||| |||||||
Sbjct 1714 AGAAACCGCAGTTTGATCATCAGAACTCATCAGGCAGCAA-CTATGACGATCTT 1766
Score = 287 bits (155), Expect = 4e-76
Identities = 207/232 (89%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 1524 CCACAGAGACACTC-TTCAATGGAAAAACCGCAGTTTGAACGTCAGAACTCATCATTTAG 1582
||||||||| | | ||||||||||||||| |||||||| | ||||||||||||| ||
Sbjct 1614 CCACAGAGATTC-CATTCAATGGAAAAACCACAGTTTGATCATCAGAACTCATCAGGCAG 1672
Query 1583 TAGCTATGGCGATCTTACGCCACAGAGATTCCCTTCAATGGA-AAGACCGCAGTTTGATC 1641
| ||||| ||||||||| |||||||||||| | ||| |||| || ||||||||||||||
Sbjct 1673 CAACTATGACGATCTTACACCACAGAGATTCTCGTCATTGGAGAA-ACCGCAGTTTGATC 1731
Query 1642 ATCAGAACTCATCAGCCAGCAACTATGACGATCTTACACCACAGAGATTCCTGTCAATGG 1701
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1732 ATCAGAACTCATCAGGCAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGG 1791
Query 1702 AGAAACCGCAGTTTGATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1753
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1792 AGAAACCGCAGTTTGATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCT 1843
Score = 165 bits (89), Expect = 2e-39
Identities = 135/157 (86%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 1520 ACAGCCACAGAGACACTCTTCAATGGAAAAACCGCAGTTTGAACGTCAGAACTCATCATT 1579
||| ||||||||| ||| ||| |||| |||||||||||||| | |||||||||||||
Sbjct 1689 ACA-CCACAGAGATTCTCGTCATTGGAGAAACCGCAGTTTGATCATCAGAACTCATCAGG 1747
Query 1580 TAGTAGCTATGGCGATCTTACGCCACAGAGATTCCCTTCAATGGA-AAGACCGCAGTTTG 1638
|| | ||||| ||||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 1748 CAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGGAGAA-ACCGCAGTTTG 1806
Query 1639 ATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1675
|||||||||||||||||| ||||| ||||| ||||||
Sbjct 1807 ATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCT 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111746413170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5