BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473576

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36920.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   486    1e-136
  AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-1398...   346    2e-94 


> AT1G36920.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: stem, male gametophyte, flower; 
EXPRESSED DURING: M germinated pollen stage, 4 anthesis; 
BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, 
OB-fold-like protein (TAIR:AT2G05642.1); Has 26 Blast 
hits to 23 proteins in 5 species: Archae - 0; Bacteria - 
4; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other 
Eukaryotes - 2 (source: NCBI BLink). | chr1:13983512-13984424 
FORWARD LENGTH=573
Length=573

 Score =  486 bits (263),  Expect = 1e-136
 Identities = 280/288 (97%), Gaps = 1/288 (0%)
 Strand=Plus/Plus

Query  1    ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG  60

Query  61   CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT  120

Query  121  GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT  179
            |||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct  121  GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT  180

Query  180  GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTGAAAGCTCAAAATTTACAACAAAAGC  239
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC  240

Query  240  TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGCGTT  287
            ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct  241  TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGCGTT  288


> AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-13985290 
FORWARD LENGTH=503
Length=503

 Score =  346 bits (187),  Expect = 2e-94
 Identities = 216/230 (94%), Gaps = 1/230 (0%)
 Strand=Plus/Plus

Query  463  GAACTGCTTGATCTAGACGGTCGTAATTATGTTTTCAAAATCATGGTTAAAGATGAGGCA  522
            ||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||
Sbjct  77   GAACTGCTTGATCTAGGTGGTCGTAATTATGTTTTCAAGATCATGGTTAAACATGAGGCA  136

Query  523  AAGTATAACCAATCTTCTACATACAAAGTTATAAGTCTTACTGATGTTCCCGATGTTATT  582
            ||| ||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct  137  AAGCATAACCAATCTTCTACATACAAAATGATAAGTCTTACTGATGTTCTCAATGTTATT  196

Query  583  CAAAGTTTCTCTGAAAGTGCTTCTACTTTGAATGCTATTGAACAAGAAATAATCACTGTC  642
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  197  CAAAGTTTCTTTGAAAGTGCTTCTACTTTGAATGATATTGAACAAGAAATAATCACTGTC  256

Query  643  TCTGGAAATTCAGTGGGGACTTCAATCGGGACCTCAACTCAGGCTG-AAA  691
            ||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct  257  TCTGGAAATTCAGTGGGGACTTCAATCGGGACCACAACTCAGGTTGTAAA  306


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 128/138 (93%), Gaps = 0/138 (0%)
 Strand=Plus/Plus

Query  682  CAGGCTGAAATTAACTTTGTTGATGTGGAAAAATTAGACAACAATGAAGACAACGCTTAT  741
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  363  CAGGCTGAAATTAACTTTGTTGATGTGGATAACTTAGACAACAATGAAGACAACGCTTAT  422

Query  742  AACGTTTCCACTCCAAAGCCTACAGCTAAAAGATCCTTGGCAACATCTAAAGATGTTCAA  801
             || ||||||| |||||||||| | |||||||||  ||||||||||||||| ||||||||
Sbjct  423  TACATTTCCACGCCAAAGCCTATAACTAAAAGATTTTTGGCAACATCTAAACATGTTCAA  482

Query  802  CAATCATCAACGAAGCCT  819
            ||||||||||||||||||
Sbjct  483  CAATCATCAACGAAGCCT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41995746892


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5