BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473579
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14660.1 | Symbols: ATNHX8, NHX8 | Na+/H+ exchanger 8 | chr1... 989 0.0
> AT1G14660.1 | Symbols: ATNHX8, NHX8 | Na+/H+ exchanger 8 | chr1:5031972-5036448
REVERSE LENGTH=2471
Length=2471
Score = 989 bits (535), Expect = 0.0
Identities = 565/580 (97%), Gaps = 0/580 (0%)
Strand=Plus/Plus
Query 1057 TGGAAGGAATCCATCATACTCACGTGGTCTGGATTAAGGGGTGCTGTTTCGCTGTCGCTC 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TGGAAGGAATCCATCATACTCACGTGGTCTGGATTAAGGGGTGCTGTTTCGCTGTCGCTC 1215
Query 1117 GCTCTATCTGTAAAACAATCAAGTGGAAACCCATATCTCAGTTCGGATACGGGAACAAGG 1176
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1216 GCTCTATCTGTAAAACAATCAAGTGGAAATTCATATCTCAGTTCAGATACGGGAACAAGG 1275
Query 1177 TTTCTATTCCTCACAGGTGGGATTGTTTTCCTAACTTTGGTTGTTAATGGATCCACTACC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 TTTCTATTCCTCACAGGTGGGATTGTTTTCCTAACTTTGGTTGTTAATGGATCCACTACC 1335
Query 1237 CAATTGCTCTTGCACCTTCTTCGCATGGACACTTTAACGGCCACTAAGAAACGAATATTG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CAATTGCTCTTGCACCTTCTTCGCATGGACACTTTAACGGCCACTAAGAAACGAATATTG 1395
Query 1297 GAGTATACGAAGTTTGAAATGATGAAGACTGCTCTAAAAGCTTTTGCAAATCTAGGAGAT 1356
|||||||| |||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 1396 GAGTATACAAAGTTTGAAATGATGAAGACTGCTTTAAAAGCTTTTGAAAATCTTGGAGAT 1455
Query 1357 GACGAGGAGCTTGGATCTGCTGACTGGCCTACAGTTATAAAACATATTTCAAGCTTGGAA 1416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1456 GACGAGGAGCTTGGATCTGCTGACTGGCCTACAGTTATAAGACATATTTCAAGCTTGAAA 1515
Query 1417 TATTTAGAAGGGAGACAAGTTAATCCTCAAAATGGGTACGAAGCTGGAAGTCTTGGCCCT 1476
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1516 GATTTAGAAGGGAGACAAGTTAATCCTCACGATGGGTACGAAGCTGGAAGTCTTGACCCT 1575
Query 1477 ACGAATATAATGGACATACGTATACGCTTCTTAAATGGTGTCCAGGCAGCTTACTGGCAG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1576 ACGAATATAATGGACATACGTATACGCTTCTTAAATGGTGTCCAGGCAGCTTACTGGGAG 1635
Query 1537 ATGCTTGATGATGGGAGAATAACACAATGTACTGCTAATGTTTTGATGCAATCAGTAGAC 1596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ATGCTTGATGATGGGAGAATAACACAATGTACTGCTAATGTTTTGATGCAATCAGTAGAT 1695
Query 1597 GAGGCACTTGACCTTGTTTCTACCAGTTCTTTAAGCGACT 1636
||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GAGGCACTTGACCTTGTTTCTACCAGTTCTTTAAGCGACT 1735
Score = 571 bits (309), Expect = 8e-162
Identities = 359/384 (93%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 639 GGTATCGGTTGTGGTTTTCCAGTTATTTTTCAAGATGGTGATGGGACATAACTCTGATTG 698
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 609 GGTATCGGTTGTGGTTTTTCAATTATTCTTCAAGATGGTGATGGGGCATAACTCTGATTG 668
Query 699 GGGTTCTATCATCAGATTTCTTGTTCAAAATTCATTCGGACCTCTAGGCATTGGCCTAGC 758
|||||| || |||| ||||||||| ||||| ||||||||| || |||||||||| |||||
Sbjct 669 GGGTTCCATAATCAAATTTCTTGTCCAAAACTCATTCGGAGCTGTAGGCATTGGTCTAGC 728
Query 759 TTTTGGATTTGCATCAGTTTTTTGGCTTAAATTCATATTCAATGACACCGTGGTTCAGAT 818
||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 729 TTTTGGAATTGCATCAGTTTTTTGGCTTAAATTCATATTCAATGACACGGTGGCTCAGAT 788
Query 819 CACTGTAACACTTTCAGCGAGCTATTTCGCTTATTACACTGCTCAAGAGTGCGCTGGGGT 878
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 789 CACTGTAACACTTTCAGCGAGCTATTTCGCCTATTACACTGCTCAAGAGTGGGCTGGGGT 848
Query 879 TTCTGGAATTTTGACTGGCATGATTTTGGGGATGTTTTTCGCCGCATTTGCAAGGACAGC 938
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 849 TTCTGGAATTTTGACTGTCATGATTTTGGGGATGTTTTTCGCTGCATTTGCAAGGACAGC 908
Query 939 ATTTAAGGGTGACAGTCACCAGAGTCTGCATCACTTCTGGGAAATGGCCGCTTATATTGC 998
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 909 TTTTAAGGGGGACAGTCACCAGAGTCTGCATCACTTCTGGGAAATGGCCGCTTACATTGC 968
Query 999 AAATACATTAGCTTTTATACTCAG 1022
||||||| ||| |||||| |||||
Sbjct 969 AAATACACTAGTTTTTATGCTCAG 992
Score = 209 bits (113), Expect = 7e-53
Identities = 137/147 (93%), Gaps = 8/147 (5%)
Strand=Plus/Plus
Query 1710 TAACATTGCTTCTACTGTAATCAATGAAAGTGAGGTGGAAGGAGAAGAAGCAAAACAGTT 1769
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 TAACATTGCCTCTACTGTAATCAATGAAAGTGAGGTGGAAGGAGAAGAAGCAAAACAGTT 1982
Query 1770 CCTGGAAGATGTCCGTGATTCATTTCCTCAG-T---G--T-TTT-GAAAACAAGACAAGT 1821
| ||||||||||||||||||||||||||||| | | | ||| |||||||||||||||
Sbjct 1983 CTTGGAAGATGTCCGTGATTCATTTCCTCAGGTTTTGAGTGTTTTGAAAACAAGACAAGT 2042
Query 1822 AACACATTATGTGCTGAATCATCTAAA 1848
|||||||||||||||||||||||||||
Sbjct 2043 AACACATTATGTGCTGAATCATCTAAA 2069
Score = 198 bits (107), Expect = 2e-49
Identities = 121/128 (95%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1876 TCTGACTTGAAGAAGCTCCTGAGAAATCCTCCTTTGCTAAAACTTCCAAATATAGACGAT 1935
|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 2146 TCTGACTTGAAGAAGCTCCTGAGACATCCTCCTTCACTAAAACTTCCAAATGTAGACGAT 2205
Query 1936 CTGATCACCAGCAATCCTTTATCGAAAGATCACTCAAGCTTCAGGAGTTTGGCCATTGGC 1995
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2206 CTGATCACCAGCAATCCTTTATTGAAAGATCGCTCAAGCTTCAGGAGTTTGGCCATTGGC 2265
Query 1996 GAGACAGA 2003
|| |||||
Sbjct 2266 GAAACAGA 2273
Score = 180 bits (97), Expect = 5e-44
Identities = 108/113 (96%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 58 TTT-GCGGGAACTTCACTGGTTCTCGGCACCGCGTGTAGACATTTGTTTAACGGCACTAG 116
||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 117 TTTCGCGGGAACTTCGCTGGTTCTCGGCACCGCTTGTAGATATTTGTTTAACGGCACTAG 176
Query 117 AGTTCCGTACACCGTCGTTCTTCTCGTCATCGGCATTGTTCTCGGATCCCTAG 169
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 177 AGTTCCGTACACCGTCGTTCTTCTCGTCATCGGCATTTTTCTCGGATCCCTAG 229
Score = 82.4 bits (44), Expect = 2e-14
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 576 ACTTTTCCATATAACTGGGACTGGAAAACATCATTGTTGCTTGG 619
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ACTTTTCCATATAACTGGGACTGGAAAACATCATTGTTGCTTGG 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99246477465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5