BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473585
Length=2606
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34300.1 | Symbols: | lectin protein kinase family protein ... 3731 0.0
> AT1G34300.1 | Symbols: | lectin protein kinase family protein
| chr1:12503406-12506048 FORWARD LENGTH=2643
Length=2643
Score = 3731 bits (2020), Expect = 0.0
Identities = 2419/2613 (93%), Gaps = 22/2613 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGCTTCACAATCGCAACAATGGCGGAGAAGAAGCCATttctcaaacttctccct 60
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 21 AGAAGAAGCTTCACAATCGTAACAATGGCGGTGAAGACGCCATTTCTCAAACTTCTCCCT 80
Query 61 cttcttcttctgcttctccttcacttccctttatcattctctACCATACCTCTCGGCTCT 120
||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 81 CTTCTTC-TC--CTTCTCCTCCACTTCCCTTTCTCATTCTCTACCATACCTCTCGGCTCC 137
Query 121 GTTATTTTCGCCTCCGGTTCCAACCAGAATTGGCCATCTCCAAATTCCACTTTCTCCGTC 180
||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 138 GTTATTTACGCCTCCGGTTCCAACCAGAACTGGCCATCTCCCAATTCCACTTTCTCCGTC 197
Query 181 TCCTTTGTTCCAGGTTCTTCACCTAATTCATTCCTCGCCGCCGTTTCTTTCGCCGGAAAC 240
|||||||||||| | |||| ||||| || |||||||||||||| |||||||| |||| |
Sbjct 198 TCCTTTGTTCCATCTCCTTCCCCTAACTCCTTCCTCGCCGCCGTCTCTTTCGCTGGAAGC 257
Query 241 GTTCCGATATGGTCAGCGGGAACCGTTGACTCACGAGGATCTCTTCGTCTTCTCACCTCC 300
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 258 GTTCCGATATGGTCAGCAGGAACCGTTGACTCACGAGGATCTCTTCGTCTTCACACCTCC 317
Query 301 GGCTCCCTCCGCCTCACCAACGGCTCCGGAACCACCATCTGGGATTCCGGTACAGATCGT 360
||||| ||||| |||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 318 GGCTCTCTCCGTCTCACCAACGGCTCCGGAACCACCGTCTGGGACTCTAAAACCGATCGT 377
Query 361 CTCGGTGTTACTTCCGGTTCGATTGAAGATTCCGGTGAATTTATTCTCCGCAACAACCGA 420
|||||||||||||||||||||||||||||| |||||||||| || |||| ||| ||||||
Sbjct 378 CTCGGTGTTACTTCCGGTTCGATTGAAGATACCGGTGAATTCATCCTCCTCAATAACCGA 437
Query 421 AGCATTCCGGTTTGGTCTTCCTTCGATAATCCGACGGATGCAATCGTCCAATCGCAGAAT 480
||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 438 AGCGTCCCGGTTTGGTCTTCCTTCGATAATCCGACGGATACAATCGTCCAATCGCAGAAT 497
Query 481 TTCACCGTCGGTAAGATTCTCCGATCTGGTCTTTACTCGTTTCAGTTAGAGACAAGTGGG 540
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 498 TTCACCGCCGGTAAGATTCTCCGATCTGGTCTTTACTCGTTTCAGTTAGAGAGAAGTGGG 557
Query 541 AATCTTACTCTTAGGTGGAACACTAGCACGATTTACTGGAATCTTGGTCTCAATTCTTCG 600
||||||||||||||||||||||||||| ||||||||||||| | ||| || |||||||||
Sbjct 558 AATCTTACTCTTAGGTGGAACACTAGCGCGATTTACTGGAACCATGGACTTAATTCTTCG 617
Query 601 ATTAGCTCGAACCTATCGTCTCCGAGCTTAGGTTTAGTATTACGGTCTAATGGAGTTGTG 660
|||||||||| ||||||||| | | ||| || ||| |||| | |||||||||||||
Sbjct 618 TTTAGCTCGAATCTATCGTCT-C---C-TAGATTAAGT-TTACAGACTAATGGAGTTGTT 671
Query 661 TCAATCTTCGATTCGAATCTTCGTGGCGGCGTTGACACCGTTTACAGTGGCGATTACGGT 720
|| |||||||| || ||||||| ||| || | ||| | |||||| |||||||||||||||
Sbjct 672 TCGATCTTCGAATCAAATCTTCTTGGAGGAGCTGAAATCGTTTATAGTGGCGATTACGGT 731
Query 721 GATAGCGATACTTTTAGGTTCTTGAAGTT-G--GATGATGGGAATTTGAGAATTTACAGT 777
|||||| |||| ||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 732 GATAGCAATACGTTTAGGTTCTTGAAGTTAGATGATGATGGGAATTTGAGAATCTACAGT 791
Query 778 TCTGCGAGTAGAAGTAGTGGACCTGTGAATGCTCATTGGTCTGCTGTTGATCAGTGCCTT 837
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 792 TCTGCTAGTAGAAACAGTGGACCTGTGAATGCTCATTGGTCTGCTGTTGATCAGTGTCTT 851
Query 838 GTTTATGGATATTGTGGGAACTTTGGGATTTGTAGTTACAACGATACTAATCCGATTTGC 897
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 852 GTTTATGGATATTGTGGAAACTTTGGGATTTGTAGTTACAATGATACTAATCCGATTTGT 911
Query 898 TCGTGTCCGTCTGGTAACTTTGATTTTGTTGATGTGAATGATAGAAGAAAGGGATGCAGA 957
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 912 TCGTGTCCGTCTCGTAACTTTGATTTTGTTGATGTGAATGATAGAAGAAAGGGATGTAAA 971
Query 958 AGAAAAGTGGAGCTAAGTGATTGCTCTGGCAACACAACTATGCTTGATTTGGCTCACACA 1017
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||
Sbjct 972 AGGAAAGTGGAGCTAAGTGATTGCTCTGGCAATACAACCATGCTTGATTTGGTTCATACG 1031
Query 1018 AGGTTATTTACATACGAAAACGATCCAAACTCGGAAATTTTCTTTGCGGGTAGTTCTCCT 1077
||||| ||||| || ||| ||||||| |||||||| | |||||||||||||||||| |||
Sbjct 1032 AGGTTGTTTACTTATGAAGACGATCCGAACTCGGAGAGTTTCTTTGCGGGTAGTTCGCCT 1091
Query 1078 TGTAGAGCTAATTGTCTTAGTAGCGTTACT-TGTCTTGCTTCTGTCTCGATGTCTGATGG 1136
||||||||||||||||||||||| ||| | |||||||||||||| || |||||||||||
Sbjct 1092 TGTAGAGCTAATTGTCTTAGTAGTGTT-TTGTGTCTTGCTTCTGTTTCCATGTCTGATGG 1150
Query 1137 GTCAGGCAATTGTTGGCAAAAACAACCCGGTTCCTTCTTTACCGGGTATCAGAGGCCATC 1196
||| || ||||||||||| ||||| || |||||||||||||| ||||| ||| |||||||
Sbjct 1151 GTCTGGAAATTGTTGGCAGAAACATCCTGGTTCCTTCTTTACTGGGTACCAGTGGCCATC 1210
Query 1197 GGTTCCAAGTACTTCTTATATTAAAGTGTGTGCTCCAGTGGTTTTTAACCCACCTTTG-- 1254
|||||| |||||||||||| |||||||||||| ||||||||| |||| || | | |
Sbjct 1211 GGTTCCGAGTACTTCTTATGTTAAAGTGTGTGGTCCAGTGGTGGCTAACACA-C-TCGAA 1268
Query 1255 ATTGCAACAAAAGACGACAG-TAACAACTCGAAAGTGCATTTGTGGATTGTCGCAGTTGC 1313
| |||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 1269 AGAGCAACAAAAGGCGAC-GATAACAACTCGAAAGTGCATTTGTGGATTGTCGCGGTTGC 1327
Query 1314 TGTAATGGCTGGGCTTCTTGGTTTGGTTGCAGTAGAGGTAGGTCTCTGGTGGTGTTGCTG 1373
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1328 TGTAATAGCTGGGCTTCTTGGTTTGGTTGCAGTAGAGATAGGTCTCTGGTGGTGTTGCTG 1387
Query 1374 TAGAAAGAATCCTCGGTTTGGAACTTTATCGTCTCACTACACTTTGCTTGAGTACGCTTC 1433
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1388 TAGAAAGAATCCTCGGTTTGGAACTTTGTCGTCTCACTACACTTTGCTTGAGTACGCTTC 1447
Query 1434 TGGTGCACCTGTGCAGTTTACCTATAAGGAGCTGCAGCGTTGCACCAAAAGTTTCAAAGA 1493
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TGGTGCACCTGTGCAGTTTACTTATAAGGAGCTGCAGCGTTGCACCAAAAGTTTCAAAGA 1507
Query 1494 GAAGCTTGGAGCTGGAGGGTTTGGAACTGTGTATAAAGGCGTGCTCACAAATAGAACCGT 1553
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1508 GAAGCTTGGAGCTGGAGGGTTTGGAACTGTGTATAGAGGCGTGCTCACTAATAGAACCGT 1567
Query 1554 GGTTGCAGTGAAGCAACTCGAGGGAATAGAGCAAGGAGAAAAGCAGTTTAGGATGGAGGT 1613
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1568 GGTTGCAGTGAAGCAACTTGAAGGAATAGAGCAAGGAGAGAAGCAGTTTAGAATGGAGGT 1627
Query 1614 TGCTACCATTAGCAGCACACACCATCTGAATCTAGTCAGACTGATCGGGTTTTGCTCCCA 1673
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1628 TGCTACCATTAGCAGCACACACCATCTGAATCTAGTCAGACTGATTGGATTTTGCTCCCA 1687
Query 1674 GGGAAGACACAGGCTTCTCGTCTATGAGTTCATGAGAAACGGATCTCTTGATAACTTCCT 1733
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1688 GGGAAGACATAGGCTTCTCGTCTATGAGTTCATGAGAAATGGATCTCTCGATAACTTCCT 1747
Query 1734 GTTTACTACTGATTCAGGGAAGTTCTTGACTTGGGAGTATCGGTTTAGCATTGCGCTTGG 1793
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1748 GTTTACTACTGATTCAGCGAAGTTCTTGACTTGGGAGTATCGGTTTAACATTGCCCTTGG 1807
Query 1794 GACGGCAAAGGGAATAACTTACCTCCACGAGGAGTGCCGCGACTGCATTGTACACTGCGA 1853
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 GACGGCTAAGGGAATAACTTACCTCCACGAGGAGTGCCGCGACTGCATTGTACACTGCGA 1867
Query 1854 CATTAAACCCGAGAACATTCTCGTGGATGACAATTACGCTGCCAAAGTCTCGGACTTTGG 1913
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1868 CATTAAACCGGAGAACATTCTCGTAGATGACAATTTTGCTGCCAAAGTCTCGGACTTTGG 1927
Query 1914 ACTCGCCAAACTCTTGAACCCAAAAGACAACAGATACAACATGAGCAGCGTTAGAGGAAC 1973
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1928 ACTTGCCAAACTCTTGAACCCAAAAGACAACAGATACAACATGAGCAGTGTTAGAGGAAC 1987
Query 1974 AAGAGGCTATTTAGCGCCTGAATGGCTCGCAAATCTTCCCATAACCTCAAAATCGGATGT 2033
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 AAGAGGCTATTTAGCTCCTGAATGGCTCGCAAATCTTCCCATAACCTCAAAATCGGATGT 2047
Query 2034 CTATAGCTATGGAATGGTTCTACTAGAGCTAGTCAGCGGAAAAAGGAACTTTGATGTCTC 2093
|||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 2048 CTATAGCTATGGAATGGTCCTACTAGAGCTAGTTAGCGGTAAAAGAAACTTTGATGTCTC 2107
Query 2094 AGAGAAAACGAACCACAAGAAATTCTCGATCTGGGCATTCGAGGAGTTTGAAAAGGGCAA 2153
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2108 GGAGAAAACGAACCACAAGAAATTCTCGATCTGGGCATACGAGGAGTTTGAAAAGGGCAA 2167
Query 2154 CACCGAGGCGATCCTAGACACACGTTTAGGCGAAGATCAAACTGTTGGTATGGAACAAGT 2213
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 2168 CACCAAGGCGATCCTAGACACACGTTTAAGCGAAGATCAAACTGTTGATATGGAACAAGT 2227
Query 2214 GAGGAGAATGGTTAAGACAAGCTTCTGGTGCATACAAGAGCAGCCATTGCAGAGGCCCAC 2273
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2228 GATGAGAATGGTTAAGACAAGCTTCTGGTGCATACAAGAGCAGCCATTGCAGAGACCGAC 2287
Query 2274 AATGGGGAAAGTGGTTCAAATGCTAGAAGGAATCACAGAGATAAAGAAACCGCCATGTCC 2333
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 2288 AATGGGGAAAGTGGTTCAAATGCTAGAAGGAATCACAGAGATAAAGAACCCACTATGTCC 2347
Query 2334 AAAGACCATAAGCGAAGTATCGTTTTCAGGGAACAGTATGAGCACAAGCCATGCATCTGT 2393
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2348 AAAGACCATAAGTGAAGTATCGTTTTCAGGGAACAGTATGAGCACGAGCCATGCATCTAT 2407
Query 2394 GTTGGTTGCTTCAGGTCCGACTCGATCATCCTCTTCGTCTGCTACACGGTCGTTTCAGAC 2453
||| |||||||| ||||||||||| ||||| |||| ||||||||||| |||||||||||
Sbjct 2408 GTTTGTTGCTTCGGGTCCGACTCGTTCATCTTCTTTTTCTGCTACACGATCGTTTCAGAC 2467
Query 2454 AATGGGGATCACATCGTCTGGACCGGCTTCCACTAGGATCAGTGAAGGCTCTATGCTTGG 2513
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2468 AATGGGGATCACATCGTCTGGACCAGCTTCCACAAGGATCAGTGAAGGCTCTATGCTTGG 2527
Query 2514 ATCATAAAAATTGCTGTATTGTGATTAGTAATGTCTAGCTTGTTTTAATTTACTTATT-G 2572
||| ||||| | | ||||||||||||| |||||||||| ||||||| ||||||||||| |
Sbjct 2528 ATCTTAAAAGT-GTTGTATTGTGATTACTAATGTCTAGGTTGTTTTGATTTACTTATTTG 2586
Query 2573 CATACGTTATAATTGTATAGGAACACTGCAAAG 2605
||||||||||||||||||||||||||| |||||
Sbjct 2587 CATACGTTATAATTGTATAGGAACACTTCAAAG 2619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129380545997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5