BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473586
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34320.1 | Symbols: | Protein of unknown function (DUF668) ... 3441 0.0
> AT1G34320.1 | Symbols: | Protein of unknown function (DUF668)
| chr1:12520179-12524370 FORWARD LENGTH=2718
Length=2718
Score = 3441 bits (1863), Expect = 0.0
Identities = 2224/2391 (93%), Gaps = 53/2391 (2%)
Strand=Plus/Plus
Query 167 TTTTTTGCGTATGGAGAGTTTCGAGAGAGTTTAATTTGGATAAC-AAATTTGGTAACTTG 225
||||||||||||||||||||||||||||| ||| || | | |||||||| ||||||
Sbjct 362 TTTTTTGCGTATGGAGAGTTTCGAGAGAG-----TTT-GAGAGCTAAATTTGGAAACTTG 415
Query 226 TTGTGATGGGTGGGCTTTGTTCGAGAAGTTCATCTGTAAATAATGCTCCTGGTGGAAGCT 285
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 416 CTGTGATGGGTGGGCTTTGTTCAAGGAGTTCATCTGTAAATAATGCTCCTGGTGGAACCT 475
Query 286 TTGCACATGTTAATGG---TCATCTCAATAACAGTAATGGGTCTGAAGTGAATTTTCAGT 342
|||||||||||||||| ||||||||||||| |||| ||||| |||||| |||
Sbjct 476 TTGCACATGTTAATGGTCATCATCTCAATAAC---AATGCCTCTGACTTGAATTCTCA-- 530
Query 343 CTTCTGGTGAAGGTGGTGGAGAGAAAGATGTTGCTGATCCTTCTCCTGTTAGGGAGAATG 402
|||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 531 -TTCTGGTGAA---AGTGGACTTAAAGA------TGATCCTTCTCCTGTTACCGAGAATG 580
Query 403 TGGATAATAATAATAAACATACTTCGGAATCGTTTTCTTTTCCTATAGTCTCTGGTGGAT 462
| | || ||||||| ||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 581 T---TGATGATAATAAGCATACATCGGAATCGTTTTCGTTTCCTATAGTCTCTAGTGGAT 637
Query 463 CTCATCCTCAAAATCTCGAGGATGGGATTCCTCGGTTATCAAGGGTTTTATCTGAGAAAT 522
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 638 CTCATCCTCAAAATATCGAGGATGGGATTCCTCGGTTATCGAGGGTTTTATCTCAGAAAT 697
Query 523 CTAGATCCACTAAGTCTAGACAAGCTGCTGTAGCTAAGGTTTCGGAAGTAAGCTCTCTTT 582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 698 CTAGATCCACTAAGTCTAGACAAGCTGCTGTTGCTAAGGTTTCGGAAGTAAGCTCTCTTT 757
Query 583 TGGGTAGAGCTGGTACTATGGGACTTGGTAAAGCTGTGGATGTGTTGGATACACTTGGGA 642
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 758 TGGGTAGGGCTGGTACTATGGGACTTGGTAAAGCTGTGGATGTGTTGGATACACTCGGGA 817
Query 643 GTAGTATGACGAATTTGAATCTTAGTGGCGGGTTTTCTTCTGCGACGACAGTTAAAGGGA 702
|||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 818 GTAGTATGACGAATCTGAATCTTAGTGGGGGGTTTTCTTCTGCGACGACGGTGAAAGGGA 877
Query 703 ATAAGATATCTATCTTGTCGTTTGAAGTTGCTAATACTATTGTTAAAGGTGCTAATCTTA 762
|||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 878 ATAAGATATCAATCTTGTCTTTTGAAGTTGCTAATACTATTGTTAAAGGCGCCAATCTTA 937
Query 763 TGCATTCTCTTTCGAAAGATAGTATTACTCATTTAAAAGAGGGAGTGTTACCTTCAGAAG 822
|||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 938 TGCATTCTCTTTCGAAAGATAGCATTACTCATTTGAAAGAGGTTGTGTTACCTTCAGAAG 997
Query 823 GTGTTCAAAATTTAATATCGAAAGATATGGATGAACTGTTGAGAATTGCTGCTGCGGATA 882
||||||| || | ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 998 GTGTTCAGAACCTGATATCGAAAGACATGGATGAACTGTTGAGAATTGCTGCTGCTGATA 1057
Query 883 AAAGGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGG 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AAAGGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGG 1117
Query 943 ATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGGTTGGGCTCTGAATTTACACCCC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGGTTGGGCTCTGAATTTACACCCC 1177
Query 1003 AGAAACATTTGAAAGAGGAAGCAGAAACCATAATGCACCAGCTGATGTCATTTGTTCATT 1062
||||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1178 AGAAACACTTGAAACAGGAAGCAGAGACCATTATGCACCAGATGATGTCATTTGTTCATT 1237
Query 1063 TTACAGCTGACTTGTATCATGAGCTCCATGCGCTGGATAGGTTTGAACAAGATTACCAAC 1122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1238 TTACAGCTGACTTGTATCATGAACTCCATGCGCTGGATAGGTTTGAACAAGATTACCAAC 1297
Query 1123 GTAAGATCCAGGAAGAAGAGAACCCAAGCACAGCACAACGAGGTGTAGGAGATACCCTCG 1182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1298 GTAAGATCCAGGAAGAAGAGAACCCAAGCACAGCACAACGAGGTGTGGGAGATACCCTCG 1357
Query 1183 CTATCTTGAGAACAGAATTAAAGAGTCAGAAGAAGCATGTAAGAAACTTAAAGAAAAAAT 1242
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1358 CTATCTTGAGAACTGAATTAAAGAGTCAGAAGAAGCATGTTAGAAACTTAAAGAAAAAGT 1417
Query 1243 CTCTTTGGTCTAGGATCTTGGAAGAGGTGATGGAGAAACTCGTAGATGTTGTCCATTTTT 1302
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1418 CTCTTTGGTCTAGGATCTTGGAAGAGGTGATGGAGAAACTAGTAGATGTTGTCCATTTCT 1477
Query 1303 TGCATTTGGAGATTCATGAAGCCTTTGGTGGTGCGGATCTTGATAAGCCTGCAAATGACT 1362
||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1478 TGCATTTAGAGATTCACGAAGCCTTTGGTGGTGCGGATCCTGATAAGCCTGCAAATGACC 1537
Query 1363 CACCAATCAATCATAAAAAGTTAGGCTCTGCTGGTCTTGCCTTACATTACGCAAACATCA 1422
| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1538 CGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCA 1597
Query 1423 TTACTCAAATTGATACTCTTGTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATG 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 TTACTCAAATTGATACTCTTGTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATG 1657
Query 1483 CTTTGTACCAAGGTTTACCCCCAAGCATAAAATCTGCTTTACGCTCCAGAATACAGTCCT 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CTTTGTACCAAGGTTTACCCCCAAGCATAAAATCTGCTTTACGCTCCAGAATACAGTCCT 1717
Query 1543 TCCAGGTTAAAGAAGAGCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACGTTGC 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1718 TCCAGGTTAAAGAAGAGCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGC 1777
Query 1603 AGTGGCTTGTTCCTGTTGCTACAAACACTACCAAAGCGCATCATGGGTTTGGATGGGTTG 1662
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1778 AGTGGCTTGTTCCTGTTGCTACAAACACCACCAAAGCGCATCATGGTTTTGGATGGGTTG 1837
Query 1663 GAGAATGGGCAAGTTCCGGGTCAGAGGCGAACCAGAGACCTGCAGGTCAAACCATACTAA 1722
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1838 GAGAATGGGCAAGTTCCGGGTCGGAGGCGAACCAGAGACCTGCAGGTCAAACCATACTAA 1897
Query 1723 GGATAGATACTCTTCACCATGCAGATAAAGAAAAAACCGAGGCTTACATATTAGACCTGG 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 GGATAGATACTCTTCACCATGCAGATAAAGAAAAAACCGAGGCTTACATATTAGACCTGG 1957
Query 1783 TGGTGTGGCTTCATCATCTCGTTACCCAAGTCAGGGCCACTACAGGTTATGGCCTAAGAT 1842
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 TGGTGTGGCTCCATCATCTCGTTACCCAAGTCAGGGCCACTACAGGTTATGGCCTAAGAT 2017
Query 1843 CTCCTGTTAAGTCTCCAATCAGATCACCTAACCAGAAAACGATCCAACTCTCCAGCGGTT 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CTCCTGTTAAGTCTCCAATCAGATCACCTAACCAGAAAACGATCCAACTCTCCAGCGGTT 2077
Query 1903 CACACAACCCAAGTCTGGGTTCT-CCGTTGCTGACTACGGAGGATCAAGAGATGCTTAGA 1961
|||||||||| ||| |||||| | || |||||||||||||||||||||||||||||||||
Sbjct 2078 CACACAACCCGAGTATGGGTT-TGCCATTGCTGACTACGGAGGATCAAGAGATGCTTAGA 2136
Query 1962 GACGTAAGCAAGCGGAGAAAGACGCCAGGAATAAGCAAGAGCCAAGAGTTTGAAACGGTG 2021
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 GATGTAAGCAAGCGGAGAAAGACGCCAGGAATAAGCAAGAGCCAAGAGTTTGAAACGGTG 2196
Query 2022 GCTAAAACACGGCTTTGTAAGCACCATAGGCTAAGCAAAAGCAGTAGCCACTCGCCGATG 2081
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2197 GCTAAAGCACGTCTTTGTAAGCACCATAGGCTAAGCAAAAGCAGTAGCCACTCACCAATG 2256
Query 2082 ATGGGCGAGATGATGAAGAATAAGAAGGATACTTTCTCAACCAGAAGACCTTCTTCTGTT 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 ATGGGCGAGATGATGAAGAATAAGAAGGATACTTTCTCAACCAGAAGACCTTCTTCTGTT 2316
Query 2142 CCCATCATCGATTTTGACATTGATCGCATGAAAGCCCTCGATGTGATTGATCGCGTGGAC 2201
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2317 CCCATCATTGATTTTGACATTGATCGCATGAAAGCTCTCGATGTGATTGATCGCGTGGAC 2376
Query 2202 ACCATTCGAAGCTTGTAGTTAAATACTTCCACACCATCGGAGTTCAGAAATTGGGATGTA 2261
|||||||||||||||||||||| ||||||||| ||||| |||||||||| | ||| | |
Sbjct 2377 ACCATTCGAAGCTTGTAGTTAACTACTTCCACTCCATCAGAGTTCAGAA-TAGGGGT-TG 2434
Query 2262 AA-G-A-GT-AAAGACCACACTCACTTATCATCAAAACAAAAGTTGAT--GAT-ATGAAT 2314
|| | | | ||| ||||| ||| |||||| ||||| |||||| ||| | ||||
Sbjct 2435 AATGGATGGGAAACACCACTCTC--TTATCACCAAAAGTT--GTTGATATGATGAAGAAT 2490
Query 2315 CGGAATGCGATTGATCCCACAGGTGCCATCGAAACCTTTTATAGGTGATGAAAAATTGGC 2374
| ||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 2491 CTGAATGTGATTCATCGCAC-GGTGCCATCGAAACCCTTTATAGGTGATGAAAAAATGGC 2549
Query 2375 AGAGCTTATTAGTATCtttgtactctttttggtttttgtgggtgtaatttggtttggttt 2434
|||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2550 AGAGGTTAGTA--A-CTTTGTACTCTTTTTGGTTTTTGTGGGTGTAATTTGGTTTGGTTT 2606
Query 2435 tgtagcatttcctttgtatt-gttgttctttttcttgttgtagactagttgtATTGTGTA 2493
| |||||||||||||||||| ||||||||||||||| || | |||||||||||||||
Sbjct 2607 TTTAGCATTTCCTTTGTATTTGTTGTTCTTTTTCTTCTT--A---TAGTTGTATTGTGTA 2661
Query 2494 CATACAAGAAACGTTACTACATATATTTCGAGAATAAAAATATATGATCTT 2544
|||||||||||| ||| ||||||| ||| ||||||||||||| || |||||
Sbjct 2662 CATACAAGAAACTTTATTACATATGTTTGGAGAATAAAAATAGATTATCTT 2712
Score = 226 bits (122), Expect = 9e-58
Identities = 162/179 (91%), Gaps = 12/179 (7%)
Strand=Plus/Plus
Query 1 ctctctctctctttctcgagtcgcgtttcttcttctcttttcCTTGTAGACATCTCCACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 CTCTCTCTCTCTTTCTCGAGTCGCGTTTCTTCTTCTCTTTTCCTTGTAGACATCTCCACG 78
Query 61 ATTCTTCAGCTCAGAACTTGTCACTTCTCTCTACAGCTTAT-CTCAAGTA-T--CGA--A 114
||||||||||| ||| ||| ||||||||||||| ||||| | |||||| | | ||| |
Sbjct 79 ATTCTTCAGCTGAGAGCTTCTCACTTCTCTCTAGAGCTT-TGCTCAAGAACTAGCGACGA 137
Query 115 -GAAGAAGAAGAA---TCTGA-CTTCAATCTAATTCCCAGATCCAAGTTTCTGACTCTT 168
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 138 AGAAGAAGAAGAAGAATCTGAACTTCAATCTAATTCCCAGATCCAAGTTTCTGACTCTT 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126270195531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5