BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473587
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34340.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2542 0.0
> AT1G34340.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:12530827-12534162 FORWARD LENGTH=1833
Length=1833
Score = 2542 bits (1376), Expect = 0.0
Identities = 1593/1695 (94%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 1 AAAAAATCTTCACCCGCCACTGAACCAT---GAAG--G-TCCTTCTCTAATTCTTATCGC 54
|||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 17 AAAAAATCTTCACCCGCCACTGAACCATGAAGAAGAAGATCCTTCTCTAATTCCTATCGC 76
Query 55 CGGATCTG-----------Ca-aaa--aaaTCAAT-G--GAACAAGATCCGATTCTATCT 97
|||||||| || ||| |||||||| | ||| |||||| ||||||||||
Sbjct 77 CGGATCTGCAAAAACAAATCACAAATCAAATCAATGGAAGAAGAAGATCTGATTCTATCT 136
Query 98 CCATCTCCATACGATCTTCTCTTCCAAGCTCTATCACTAATCCCAATTCGTCACTACCTC 157
||||||||||||||||||||||| ||||||||| | || ||||| |||||||||||||||
Sbjct 137 CCATCTCCATACGATCTTCTCTTTCAAGCTCTAACTCTCATCCCGATTCGTCACTACCTC 196
Query 158 ATCGCTCTCTTCCTTCTCTGGACCATCTTCTTCTACAATTTCCTCGAATTTCACTTCCTT 217
|||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 197 ATCGCTCTCTTCGTTCTCTGTACCATCTTCTTCTACAATTTCGTCGAATTTCACTTCCTT 256
Query 218 GGAGATGCGATTCTTCGATATTTCAGATGTCGAGTCAATCTCATTTATAATCCAGATTCT 277
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 257 GGAGATGCGATTCTTCGTTATTTCAGATGTCGCGTCAATCTCATTTACAATCCAGATTCT 316
Query 278 CCTCTTTATCACGGTGTTGTTTCACGGTGTCGGATTCTTCACGGCCGATATGTGGCGACT 337
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 317 CCTCTTTATCACGGTGTTGTTTCTCGGTGTCAGATTCTTCACGGCCGATATGTGGCGACG 376
Query 338 CCGTGGTTAGCAAGTCCTCATATTCAGACTTGTTTCTTGAATTTTCATGGATTGCCTCCA 397
|| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 377 CCATGGTTAGCGAGCCCTCATATTCAGACTTGTTTCTTGAATTTCCATGGATTGCCTCCA 436
Query 398 GTTTTCAGCTATAAAAGGCAGCTATTTCTTGCTTCTGATGGTGGAACGATTGCATTGGAT 457
||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 437 GTTTTCACCTATACAAGACAGCTATTTCTTACTTCTGATGGTGGAACGATTGCATTAGAT 496
Query 458 TGGCTTACGAATTCTGATGTTCTTGATGGTGCTCTTCATAATCAGAGTGAAATTACAAAA 517
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 497 TGGCTTACGAATTCTGATGTTCTTGATGGTTCTCTTCACAATAAGAGTGAAATTACAAAA 556
Query 518 GAAGATACAACGCCTATTGCAGTTATTATTCCAGGGTTAACTAGTGATTCTTCATCTGCA 577
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 557 GAAGATACAACGCCTATAGCTGTTGTTATTCCAGGGTTAACTAGTGATTCTTCATCTGCA 616
Query 578 TATTTAAAGCATCTTGCTTACAACACTGCAAAAACAGGTTGGAATGTTGTTATTAGCAAC 637
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 617 TATTTAAAGCATCTTGCTTACGACACTGCAAAAACAGGTTGGAATGTTGTTATTAGCAAC 676
Query 638 CATAGAGGATTGGGCGGTGTTTCTGTTACATCAGATCGCTTCTATAATGCTGGATGGACG 697
|||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 677 CATAGAGGATTGGGAGGAGTTTCTGTTACTTCAGATTGCTTCTATAATGCTGGATGGACA 736
Query 698 GAGGATATAAGGGTAGTTCTTGATTATCTTCAACACAAATACCCGAGGGCTCCTCTCTTT 757
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GATGATATAAGGGTAGTTCTTGATTATCTTCAACACAAATACCCGAGGGCTCCTCTCTTT 796
Query 758 GCTATTGGAACTAGCATTGGAGCAAATGTTCTGGTCAAATACCTTGGGGAAGAGGGTGAA 817
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 797 GCTATTGGCACTAGCATTGGAGCAAATGTTCTGGTAAAATACCTTGGGGAAGAGGGTGAA 856
Query 818 AAGACTCCTCTGAGGGGTGCTGTAGCTATTTGCTCTCCATGGGACCTCTTGATTGGTGAC 877
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 857 AAGACTCCTCTGAGAGGTGCTGTTGCTATCTGCTCTCCATGGGACCTCTTGATTGGTGAC 916
Query 878 AGGTTTATTTGTCGGACGTTGAAACAAAAGCTCTACGACAAAGCTCTCACCATCGGACTC 937
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 917 AGGTTTATCTGTCGGACTTTGAAACAAAAGCTCTATGACAAAGCTCTCACCATCGGACTC 976
Query 938 CAAGGTTATGCCCAATTGCATGAACCTCAGTTTTTACGGCTTGCTAATTGGGAAGGCATC 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CAAGGTTATGCCCAATTGCATGAACCTCAGTTTTTACGGCTTGCTAATTGGGAAGGCATC 1036
Query 998 AAAAAGTCACGTTCCATCCGCGATTTTGACAACCATGCTACGTGTCTAGTTGGAAAATTC 1057
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1037 AAAAAGTCACGTTCCATCCGAGATTTTGACAACCATGCTACCTGTCTAGTTGGAAAATTC 1096
Query 1058 GAGACTGTGGATACGTATTACCGAAAATCGAGCAGTACTCAATACGTAGGAAATGTGGCG 1117
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1097 GAGACTGTGGATACGTATTACCGAAAATCGAGCAGCACTCAATACGTAGGAAATGTGGCG 1156
Query 1118 GTGCCGCTACTTTGTATAAGTGCTTTAGATGATCCATTATGCACAAAGGAAGCTATTCCC 1177
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1157 GTGCCACTACTCTGTATAAGTGCTCTAGATGATCCATTATGCACAAAGGAAGCTATTCCC 1216
Query 1178 TGGGACGAATGCAGGGCAAACAAAAACATTGTATTGGCTACAACAAATCACGGGGGACAT 1237
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1217 TGGGACGAATGCAGGGCCAACAAAAACATTGTCTTGGCTACAACAAATCACGGGGGACAT 1276
Query 1238 CTAGCGTTCTTCGAAGGATTAACTGGATCTAGCTTATGGTGGGTTCGAGCCACCAACGAG 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CTAGCGTTCTTCGAAGGATTAACTGGATCTAGCTTATGGTGGGTTCGAGCCACCAACGAG 1336
Query 1298 TTTCTTGGTGCCCTTAGCTGCAGTCCTTATATGCATATACAGAAAATTGAAGATAAAAGA 1357
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1337 TTTCTTGGCGTCCTTAGCTGCAGTCCTTATATGCATATACAGAAAATTGTAGATAAAAGA 1396
Query 1358 AGCTCAGGGTCAAGGAAAGAGGAGCCTTCGATAAACCAAGGCCCATACCTAAACATTGCA 1417
|||||||||||| ||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1397 AGCTCAGGGTCAGGGAAACAAGAGCCATCGATAAACCAAGGCCCGTACCTAAACATTGCA 1456
Query 1418 GAAGACGGGTTGGTGGCAGCAGTCAAGTACGAGCAAGACACCAATAAGACCACA-TCGAA 1476
|||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct 1457 GAAGACGGGTTGGTGGCAGCAGTCAAATATGAGCAAGACACCAATAAGACCACACT-GAA 1515
Query 1477 GCAGAGAGGACGAAAGCCTGAGGAAGATGTAACAAAGAGAAGCTTTAAGGAGCTGTGTCG 1536
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1516 GCAGAGAGGGCGAAAGCCTGAGGAAGATGTAACAAAGAAAAGCTTTAAAGAGCTGTGTAG 1575
Query 1537 GCAGACAAAACGGTCTGTATGGTGGCTTGCTTACATAGGCGTAGTTACAAGTTTCCCTTT 1596
||||||||||| ||| ||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1576 GCAGACAAAACAGTCGGTATGGTGGCTTGGTTACATAGGCATGGTTACAAGTTTCCCTTT 1635
Query 1597 ACTTGGAATGCTCCTAAACTACATCTTCCGTAAGAAGCAACGACCCACAACAACATCCAA 1656
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ACTTGGGATGCTCCTAAACTACATCTTCCGTAAGAAGCAACGACCCACAACAACATCCAC 1695
Query 1657 ATCCTAAAGTTGCTT 1671
||||| |||||||||
Sbjct 1696 ATCCTGAAGTTGCTT 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5