BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473588
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 580 5e-165
> AT1G34350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages. | chr1:12534426-12536095
FORWARD LENGTH=894
Length=894
Score = 580 bits (314), Expect = 5e-165
Identities = 389/422 (92%), Gaps = 18/422 (4%)
Strand=Plus/Plus
Query 359 TGGCTGGGGTATACTTTGCAGAGAATCTCAACCGGGAGTTGAGAAAAAACTGGAAGAGCT 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 482 TGGCTGGGGTATACTTTGCAGAGAATCTCAACCGGGAGTTGAGGAAAAACTGGAAGAGCT 541
Query 419 TCTCAACTCAAAACTACTTTGACTCGCAA-GGAGTCTTCCTATCGGTTCTCTGGTCTGGA 477
|||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 542 TCTCAACTCAAAACTACTTTGACTCG-AACGGAGTCTTCCTATCGACTCTCTGGTCTGGA 600
Query 478 CCACTTTTGGTCATTGCTATGATAATCCTGATAAACACACTGTTTTCGCTTTGCTACCTA 537
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 601 CCACTTTTGGTCATTGCAATGATAATCCTGATAAACACACTCTTTTCGCTTTGCTACTTA 660
Query 538 ATCGTAAAGTGGAAAAGAGCTGAGCTCAGGCATCGCGCAAGGCTTGCTCGTACCAAGGAG 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 ATCGTAAAGTGGAAAAGAGCTGAGCTCAGGCATCGCGCAAGGCTTGCTCATACCAAGGAG 720
Query 598 GAATAGATCCCACTTTTTTATA-TCTCACATTTATGTATACTCTCACTT--TGCAACAAA 654
|||| |||||||||||||| || |||||||||||||||||||||||| |||| ||||
Sbjct 721 GAAT-GATCCCACTTTTTT-TAATCTCACATTTATGTATACTCTCACACAATGCATCAAA 778
Query 655 -CTGTTTTGAGGTTTTTAGTAGAAGGCTAGAAGCTGCTCTTTTTATGTATTTCGTTTTTA 713
|||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |
Sbjct 779 ACTGTTTTGAG-TTTTT--TAG-----TAGAAGCTGCTCTTTT-ATGTATTTCGTTTTCA 829
Query 714 ATTGAATTGAATTGTATCAAAACCGAACCAAACCAGATTATTCTATTTCGGTTTGTTATG 773
||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| |||||||
Sbjct 830 ATTGAATCGAATTGTATCAAA-CCGAACCAAACCAAATTATTCTACTTCGGTCTGTTATG 888
Query 774 GT 775
||
Sbjct 889 GT 890
Score = 433 bits (234), Expect = 1e-120
Identities = 246/252 (98%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 107 AGACAATGGAAGAAATAAGATCGGCGATGGAGAAGCAAATGGATCTCGTAGCGGATCTGG 166
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 155 AGACAATGGAAGAAATAAGATCGGCGATGGAGAAGCAAGTGGATCTCGTAGCGGATCTGG 214
Query 167 TTGAGAAACTCTCCGGAGAGCTCCGAACGGGGTTCCAACCTGCTTACGATAATTTCTTGG 226
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 215 TTGAGAAACTCTCCGGAGAGCTCCGAACGGGGTTTCAACCTGCTTACGATAATTTCTTGG 274
Query 227 GATTTTTCCACGCCATTGATTGGAAGGAACCTTGGATTATGGGTTTAATGGCGTTTCATG 286
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GGTTTTTCCACGCCATTGATTGGAAGGAACCTTGGATTATGGGTTTAATGGCGTTTCATG 334
Query 287 CTTTGTTGCTACTGGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTTCTCT 346
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 335 CTTTGTTGTTACTAGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTCCTCT 394
Query 347 TCTTATTGGCTT 358
||||||||||||
Sbjct 395 TCTTATTGGCTT 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5