BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473593
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34370.2 | Symbols: STOP1 | C2H2 and C2HC zinc fingers super... 2418 0.0
> AT1G34370.2 | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily
protein | chr1:12550446-12552629 FORWARD LENGTH=1816
Length=1816
Score = 2418 bits (1309), Expect = 0.0
Identities = 1554/1669 (93%), Gaps = 30/1669 (2%)
Strand=Plus/Plus
Query 1 ctctctctctc-t-atcatcatcactttctctatctttctctcttctttttAAGCGGCCA 58
|||||||| || | |||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 44 CTCTCTCTATCATCATCATCATCACTTTCTCTATCTATCTCTCTTC--TTAAAGCGGCCA 101
Query 59 TTGGACCTCTCCAAGTTCCATCTCAAGCTTTTCTTCTGGTGTGTTTTGTTGTTTTCTTAA 118
|||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 102 TTGGTGCTCTCCAAGTTCCATCTCAAGCTTTTCTTCTTGTGGGTTTTGTTGTTCTCTTAA 161
Query 119 TTGAAAATCAAGATCTTGaaaaaaaaaaTGGAAACTGAAGATGATTTGTGCAACAACAAT 178
||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 162 TTGAAAAACAAGATCTTGAACTAAAAAATGGAAACTGAAGACGATTTGTGCAACACCAAT 221
Query 179 TGGGGAAGCTCTTCTTC-AAAGTCGCGTGAGCCGGGTTTATCAGACGGTGGGAA-TCAAA 236
||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||||| || |
Sbjct 222 TGGGGAAGCTCTTCTTCGAAA-TCGCGAGAGCCGGGTTCATCAGACTGTGGGAATTC-GA 279
Query 237 CTTTTACAGGTTTTACGTCGCAGCAGAAGTGGGAAGATGCTTCAATCTTGGATTATGAGA 296
| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 280 CATTCGCAGGTTTTACGTCCCAGCAGAAGTGGGAAGATGCTTCAATCTTGGATTATGAGA 339
Query 297 TGGGTGTGGAGCCTAGTGTGCAAGTTTTCGACGAAATGAAAGC-TTCGGGGCAAGCTAAT 355
||||||||||||| || | | || | | || || ||| || ||||| |||
Sbjct 340 TGGGTGTGGAGCC---TG-G--A---TT-G-C--AA-GAGAGCATT-----CAAGCAAAT 380
Query 356 GTTGATTTCCTGCAAGGCGTTAGGGCGCAAGCGTGGGATCCAAGGACGATGTTGAGTAAT 415
||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 381 GTTGATTTCTTACAAGGTGTTAGGGCTCAAGCGTGGGATCCAAGGACGATGTTGAGTAAC 440
Query 416 CTTTCCTTTATGGAGCAGAAGATTCACCAGTTGCAGGATCTTGTTCATCTGCTTGTTGGT 475
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 441 CTTTCTTTTATGGAGCAGAAGATTCACCAGCTGCAGGATCTTGTTCATCTTCTTGTTGGT 500
Query 476 CGAGGTGGGCAGCTTCAAGGTCGTCTAGACGAGCTTGCGGCGCAGCAGCAGCAGCTTATA 535
|| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 501 CGTGGTGGGCAGCTTCAAGGTCGTCAAGACGAGCTCGCGGCTCAGCAGCAGCAGCTTATA 560
Query 536 ACGACGGATCTTACTTCTATAATCATACAGCTTATTTCAACTGCAGGTAGTCTTCTTCCA 595
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACGACGGATCTTACTTCCATTATCATACAGCTTATTTCAACTGCAGGTAGTCTTCTTCCA 620
Query 596 TCTGTTAAGCATAATATGTCAACAGCGCCGGGTCCATACACTGGGCAGCCCGGTTCAGCA 655
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 621 TCTGTTAAGCATAATATGTCAACAGCTCCGGGTCCATTCACTGGGCAGCCCGGTTCAGCC 680
Query 656 GTGTTCCCTTATGCAAGGGAGGCTAATAACGTTGCTTCACAGAGCCAAAACAATAACAAC 715
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 681 GTGTTCCCTTATGTAAGGGAGGCTAATAACGTTGCTTCACAGAGTCAGAACAATAACAAC 740
Query 716 TGTGGTGCTCAAGAGTTCGATTTGCCTAAGCCGGTTGTTGTTGATGAGAGGGAAAGCCAT 775
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 741 TGTGGTGCTCGAGAGTTCGATTTGCCTAAGCCGGTTCTTGTTGATGAGAGGGAAGGTCAT 800
Query 776 GTTGTGGAGGAACATGAGATGAAAGACGAAGATGATGTGGAGGAAGGAGAGAACCTTCCT 835
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 801 GTTGTGGAGGAACATGAGATGAAAGATGAAGATGATGTGGAAGAAGGAGAGAACCTTCCT 860
Query 836 CCGGGTTCGTACGAGATATTGCAGCTTGAGAAAGAGGAGATTCTCGCACCGCATACTCAC 895
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 861 CCCGGTTCGTATGAGATATTGCAGCTTGAGAAAGAAGAGATTCTCGCACCGCATACTCAC 920
Query 896 TTCTGCACGATATGTGGTAAGGGTTTTAAGAGAGACGCGAATCTGAGGATGCACATGAGA 955
||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 921 TTCTGCACGATATGTGGCAAGGGTTTCAAGAGAGACGCGAATTTGAGGATGCATATGAGA 980
Query 956 GGGCATGGAGATGAGTACAAAACAGCAGCTGCTCTGGCAAAACCAAACAAAGAATCCGTA 1015
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 981 GGGCATGGAGATGAGTACAAAACAGCAGCTGCTCTGGCGAAACCGAACAAAGAATCCGTA 1040
Query 1016 CCCGGGTCTGAGCCGATGCTGATCAAGAGGTACTCGTGCCCATTCCTTGGTTGCAAACGT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CCCGGGTCTGAGCCGATGCTGATCAAGAGGTACTCGTGCCCATTCCTTGGTTGCAAACGT 1100
Query 1076 AACAAGGAGCACAAAAAGTTCCAGCCTTTGAAAACGATTCTATGCGTGAAGAATCACTAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AACAAGGAGCACAAAAAGTTCCAGCCTTTGAAAACGATTCTATGCGTGAAGAATCACTAT 1160
Query 1136 AAACGCACCCACTGCGATAAAAGCTTCACTTGCAGCCGGTGCCATACCAAGAAGTTCTCT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1161 AAACGCACCCACTGCGATAAAAGCTTCACTTGCAGCCGGTGCCATACCAAGAAATTCTCT 1220
Query 1196 GTCATTGCAGATCTGAAAACCCACGAGAAGCACTGCGGGAAAAACAAATGGCTCTGTTCT 1255
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1221 GTCATTGCAGATCTTAAAACCCACGAGAAGCACTGCGGGAAAAACAAGTGGCTTTGTTCC 1280
Query 1256 TGCGGTACAACATTTTCAAGGAAAGACAAGTTGTTTGGTCACATTGCTCTGTTCCAGGGA 1315
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1281 TGTGGTACAACATTTTCAAGGAAAGACAAGTTGTTTGGTCACATAGCTCTGTTCCAGGGA 1340
Query 1316 CACACGCCTGCGATCCCTCTTGAAGAGACAAAACCTTCGGCCAGTACATCCACTCAGAGA 1375
||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1341 CACACGCCTGCAATCCCTCTTGAAGAGACAAAACCATCAGCCAGTACATCTACTCAGAGA 1400
Query 1376 GGGAGCTCTGAAGGCGGGAACAACAACCAAGGAATGGTTGGCTTCAATCTCGGCTCTGCA 1435
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1401 GGGAGCTCTGAAGGCGGGAACAACAACCAAGGAATGGTTGGCTTCAATCTTGGTTCTGCA 1460
Query 1436 TCTGATGCTAACCAAGAAACCGCACAGCCTGGAATGA-TGGATGGGAAGATAAGTTTTGA 1494
|| ||||||||||||||||| ||||||||||||||| || |||||| |||| |||||||
Sbjct 1461 TCAAATGCTAACCAAGAAACCACACAGCCTGGAATGACTG-ATGGGAGGATATGTTTTGA 1519
Query 1495 GGAGCCGTTCTCGCCGATGAACTTTGATACATGTAACTTTGGAGGGTTCCACGAGTTTCC 1554
|||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1520 GGAGTCGTTCTCACCAATGAACTTTGATACATGTAATTTTGGAGGGTTCCACGAGTTTCC 1579
Query 1555 ACGACTGATGTTTGATGATTCAGAGAGTTCATTTCAAATGCTTATTGCGAATGCATGTGG 1614
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1580 GCGACTGATGTTTGATGATTCAGAGAGTTCTTTTCAAATGCTTATTGCGAATGCCTGTGG 1639
Query 1615 TTTCTCGCCTAGGAATGTTGGTGAGTCTGTTTCAGATACTAGTCTTTAA 1663
||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1640 TTTCTCGCCCAGGAATGTTGGTGAGTCTGTTTCAGATACTAGTCTCTAA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5