BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473594
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34380.2 | Symbols: | 5'-3' exonuclease family protein | ch... 1504 0.0
> AT1G34380.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:12552670-12554358 REVERSE LENGTH=1272
Length=1272
Score = 1504 bits (814), Expect = 0.0
Identities = 1026/1122 (91%), Gaps = 40/1122 (4%)
Strand=Plus/Plus
Query 1 AGAGGTTGAAGACGATGATAACAGTAGGATTTGCTCAACCCAATTCTCTCTTCTCCTTCT 60
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 46 AGAGGTTGACGACGATGATAACAGTAGGATTTATTCAACCCAATTCTCTCTTCTCCTTCT 105
Query 61 CAACTAAATCTATCGACAAGCCACAAACTTCACGAACCAAATGGGTCTC-T--TCG---- 113
|||||||||| ||||||||| ||||| |||||||||| ||||||||||| | |||
Sbjct 106 CAACTAAATCCATCGACAAGACACAACCTTCACGAACGAAATGGGTCTCTTCCTCGTCCT 165
Query 114 --------TC--GTC-CTCTTCCGTTGAGACATTTCATCGAACAGGTTATGGGCAAGTTC 162
|| || ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 166 CTTCCTTTTCTTCTCACTCTTCCGTTGAGACATTTCATCGAACAGGTAATGTGCAAGTTC 225
Query 163 TTCAGAAAGATGTTATC--T-G------T---G------GGAAGAAGAATAAAAGGGTTT 204
|||||||||||||| || | | | | ||||||||||||||||||| |
Sbjct 226 TTCAGAAAGATGTTCTCTGTGGCAACAATGAAGAAATTAGGAAGAAGAATAAAAGGGTAT 285
Query 205 TCTTCTTAGACGTTAGTCCACTTTGCTACGAAGGAAACAAACCCAGTTCACAAGCTTTTG 264
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 286 TCTTCTTAGACGTTAGTCCACTTTGCTACGAAGGAAACAAACCCAGTTCGCAAGCTTTTG 345
Query 265 GTCACTGGATTTCACTCTTCTTCTCTCAAGTCAGCCTCACTGATCCTGTCATAGCTGTTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GTCACTGGATTTCACTCTTCTTCTCTCAAGTCAGCCTCACTGATCCTGTCATAGCTGTTA 405
Query 325 TCGATGGAGAAGAAGGTAACCAGA-GACGCCGAGAATTGTTGCCTTCATATAAAGCTCAT 383
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 406 TCGATGGAGAAGAAGGTAACCA-ACGACGCAGAGAATTGTTGCCTTCATATAAAGCTCAT 464
Query 384 AGGAAATCACCAAATCCTGGGAGATACTCTAAGAGGCCACATCAGTTCGTTGATGAAGTT 443
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 465 AGGAAATCACCAAATCATGGGAGATACTCTAAGAGGCCACATCAGTTTGTTGATGAAGTT 524
Query 444 CTTAGGAAATGCAATGTGCCAGTTGTTAGATTAGAAGGGCATGAAGCAGACGATGTAGTG 503
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 525 CTTAGAAAATGCAATGTGCCAGTTGTTAGAATAGAAGGGCATGAAGCAGACGATGTAGTA 584
Query 504 GCGACGTTGATGGAACAAGCTGTGCAAAGAGGATATCGTGCGGTTATTGCATCGCCTGAC 563
|| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCTACGCTAATGGAACAAGCTGTGCAAAGAGGATATCGTGCGGTTATTGCATCGCCTGAT 644
Query 564 AAAGACTTTAAGCAGTTGATCTCAGAAAATGTTCAGATTGTCATTCCATTGGCAGATCTC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAAGACTTTAAGCAGTTGATCTCAGAAAATGTTCAGATTGTCATTCCATTGGCAGATCTC 704
Query 624 AGAAGATGGTCCTTTTATACTTTGAAACACTACCATGCTCAGTATAACTGTGATCCACTG 683
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
Sbjct 705 AGAAGATGGTCCTTTTATACTTTGAAGCACTACCATGCTCAATATAATTGTGATCCACAG 764
Query 684 TCTGATTTGAGCTTTAGATGTATAATGGGTGATGAAGTTGATGGAGTTCCAGGCATTCAG 743
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 765 TCTGATTTGAGCTTTCGATGTATAATGGGTGATGAAGTTGATGGAGTTCCGGGGATTCAG 824
Query 744 CACGTGGTCCCTGCGTTTGGAAGGAAAACAGCGATGAAACTTGTGAGAAAACATGGTTCT 803
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CACATGGTCCCGGCGTTTGGAAGGAAAACAGCGATGAAACTTGTGAGAAAACATGGTTCT 884
Query 804 CTGGAAAGTTTACTAAGCGCAGCAGCTGTAAGAACCGTGGGGAGACCATATGCTCAAGAG 863
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CTGGAGAGTTTACTAAGCGCAGCAGCTGTAAGAACCGTGGGGAGACCATATGCTCAAGAG 944
Query 864 GCTCTTACGAAATACGCAGATTACTTGAGAAGAAACTATCAAGTTCTTGCATTAAAAAGA 923
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 945 GCCCTTACGAAATACGCAGACTACTTGAGAAGAAACTATCAAGTTCTTGCCTTGAATAGA 1004
Query 924 GACGTAAGGGTAGAGATTCAAGAGGAATGGCTGGTGGAGAGAGATCCAAGCAATGATGCA 983
|| || |||||| |||||||| | ||||||||| ||||||||||| ||||||||||| ||
Sbjct 1005 GATGTGAGGGTACAGATTCAAAATGAATGGCTGATGGAGAGAGATACAAGCAATGATTCA 1064
Query 984 GAAGTATTGTCAAGCTTCTTCTCAACCTTGCATGGATAATACTAAGAAGCTCAAGCACAC 1043
|||||||||||||||||||||||||| |||||||||| ||||| | ||||| ||||||||
Sbjct 1065 GAAGTATTGTCAAGCTTCTTCTCAACATTGCATGGATGATACTGACAAGCTAAAGCACAC 1124
Query 1044 -CATCCCATCTTAGCTGATAGCAAGTTTTTGTAACCTTGAAA 1084
| || ||| |||||||||||| ||||||||| | |||||||
Sbjct 1125 TC-TCGCATTTTAGCTGATAGCTAGTTTTTGTGAGCTTGAAA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5