BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473597
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34430.1 | Symbols: EMB3003 | 2-oxoacid dehydrogenases acylt... 2675 0.0
> AT1G34430.1 | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase
family protein | chr1:12587752-12590192 REVERSE
LENGTH=1781
Length=1781
Score = 2675 bits (1448), Expect = 0.0
Identities = 1685/1792 (94%), Gaps = 45/1792 (3%)
Strand=Plus/Plus
Query 1 AACTCCGCCTGCTCTTCGATAATTCCGAGGAGCTTCTTCACTCTTCTTAAATCTCA---- 56
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AACTCCGCCTGCTCTTCGATAATTCCGAGGAGCTTCTTCACTCTTCTTATATCTCATTTC 60
Query 57 --T-T-tctctctctctctctcGCATTGCGATTAACGAAATTCGAAAAATGTCTCGTCTT 112
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTATCTCTCTCTCTCTCTCGCATTGCGATTAACGAAATTCGAAAAATGTCTCGTCTT 120
Query 113 CTCCAAACACCCTTCTTACCTTCCGTTACTCTCCCCACAAAAACACGATCTTCCGTTACG 172
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 121 CTCCAAACACCCTTCTTACCTTCAGTTTCCCTCCCCACAAAAACACGATCTTCCGTTACG 180
Query 173 GGTTTCCGAGTAAAGCCCAGAATCATCCCAATTCAAGCAAAGATCCGAGAAATTTTCATG 232
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GGTTTCCGGGTAAAGCCCAGAATCATCCCAATTCAAGCAAAGATCCGAGAAATCTTCATG 240
Query 233 CCTGCACTAAGTTCTACAATGACCGAAGGCAAAATCGTCTCATGGGTTAAATCAGAAGGC 292
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CCTGCACTAAGTTCCACGATGACCGAAGGCAAAATCGTCTCTTGGGTTAAATCAGAAGGC 300
Query 293 GATAAACTCAACAAAGGAGAGAGTGTTGTTGTTGTTGAATCTGATAAAGCTGATATGGAT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAAACTCAACAAAGGAGAGAGTGTTGTTGTTGTTGAATCTGATAAAGCTGATATGGAT 360
Query 353 GTTGAGACTTTCTACGATGGTTATTTAGCTGCGATTATGGTTGAAGAAGGTGGTGTTGCT 412
|||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 361 GTTGAGACTTTCTATGATGGTTATCTAGCTGCAATCATGGTTGAAGAAGGTGGTGTTGCT 420
Query 413 CCTGTTGGTTCTGCTATTGCTTTGTTAGCTGAAACTGAAGATGAGATTGCTGATGCTAAG 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTGTTGGTTCTGCTATTGCTTTGTTAGCTGAAACTGAAGATGAGATTGCTGATGCTAAA 480
Query 473 GCTAAAGCTTCTGGTAGTGGTGGTGGTGGTGATTCTCAGG---CT----C--CTCCT--- 520
||||||||||||||| |||||||||||||||||||| ||| || | |||||
Sbjct 481 GCTAAAGCTTCTGGTGGTGGTGGTGGTGGTGATTCTAAGGCTCCTCCGGCTTCTCCTCCC 540
Query 521 ACGGCTGCAATTGAAGCACCTGTG-GCTGTCGAGAAG-AGGATTGCGGCTCCTCCGGTTG 578
||||||||| |||||||||||||| | ||| |||||| ||| |||| ||| |||||| ||
Sbjct 541 ACGGCTGCAGTTGAAGCACCTGTGAG-TGTTGAGAAGAAGG-TTGCAGCTGCTCCGG-TG 597
Query 579 -CGGTTAAGGCGGTTGCTGCGTCTGCAGTGCATCCGGCGTCTGAAGGAGGGAAGAGGATT 637
| |||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 TCCATTAAGGCGGTGGCGGCGTCTGCGGTGCATCCGGCGTCTGAAGGAGGGAAGAGGATT 657
Query 638 GTGGCGTCTCCTTATGCTAAGAAGTTAGCTAAGGAATTGAAAGTGGAGTTGGCTGGTTTA 697
||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 658 GTGGCGTCTCCTTATGCTAAGAAGTTAGCTAAGGAGTTGAAGGTTGAATTGGCTGGTTTA 717
Query 698 GTTGGAAGTGGGCCAATGGGAAGGATTGTGGCTAAAGATGTTGAGGCGGTTGCTGCTGGA 757
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTGGAAGTGGACCGATGGGAAGGATTGTGGCTAAAGATGTTGAGGCGGTTGCTGCTGGA 777
Query 758 GGAGGAGTTCAAGCTGCTGTAGCTGTTAAGGAGGTAGTGGCAGCTCCTGGTGTGGAGTTG 817
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGAGGAGTTCAAGCTGCTGTTGCTGTTAAGGAGGTAGTGGCAGCTCCTGGTGTGGAGTTG 837
Query 818 GGATCGGTGGTTCCGTTTACGACAATGCAGGGGGCTGTGAGCAGGAATATGGTGGAGAGT 877
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 GGATCGGTGGTTCCTTTTACGACAATGCAGGGGGCTGTGAGTAGGAATATGGTGGAGAGT 897
Query 878 -TTGGCGGTTCCTACTTTTAGAGTCGGTTACACGATTACTACGGATGCTCTTGATGCTCT 936
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 CTTGG-TGTTCCTACTTTTAGAGTCGGTTACACGATTAGTACGGATGCTCTTGATGCTCT 956
Query 937 CTACAAGAAGATTAAGTCGAAAGGTGTGACAATGACGGCACTCCTAGCAAAGGCAACTGC 996
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 957 CTACAAGAAGATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGC 1016
Query 997 ACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCCTGTAGAGATGGTAACAGTTTTGT 1056
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 ACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCTTGTAGAGATGGTAACAGTTTTGT 1076
Query 1057 GTATAACAGTAGCATCAACGTTGCTGTTGCTGTTGCTATTGATGGTGGCTTGATCACTCC 1116
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 GTATAATAGTAGCATCAACGTTGCTGTTGCTGTTGCTATTGATGGTGGTTTGATCACTCC 1136
Query 1117 GGTGCTTCAGAACGCTGATAAGGTTGACATTTATTCGTTGTCTAGAAAATGGAAAGAATT 1176
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 GGTGCTTCAGAACGCTGATAAGGTTGACATTTATTCGTTATCTAGAAAATGGAAAGAATT 1196
Query 1177 GGTTGATAAGGCTCGAGCCAAGCAGCTGCAGCCTCAGGAGTACAACACTGGTACCTTCAC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGTTGATAAGGCTCGAGCCAAGCAGCTGCAGCCTCAGGAGTACAACACTGGTACCTTCAC 1256
Query 1237 TCTCTCTAACCTAGGGATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAAC 1296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAAC 1316
Query 1297 AGGAGCGATTATGGCTGTAGGAGCATCTCAACCTTCAGTGGTTGCTACTAAAGACGGCCG 1356
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 AGGAGCGATTATGGCTGTCGGAGCATCTCAACCTTCAGTGGTTGCAACTAAAGACGGCCG 1376
Query 1357 CATTGGCATGAAAAACCAGATGCAGGTGAATGTGACGGCAGATCATCGTGTCATCTATGG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CATTGGCATGAAAAACCAGATGCAGGTGAATGTGACGGCAGATCATCGTGTCATCTATGG 1436
Query 1417 TGCTGATCTCGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCT 1476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGCTGATCTTGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCT 1496
Query 1477 TACATTCTAGGCCAAATTACTGTTTTTCGCATCCCAGTCTTCTCTGCTCTTGATTCCATG 1536
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1497 TACATTCTAGGCCAAATTACTGCTTTTCGCATCCCAGTCTTCTCTGCTTTTGATTCCATG 1556
Query 1537 GGAGCTTGTATTTCTGCGGTAATCAGTTTCTTTCATAGAATCAA-CCTATTAAGAGTAAT 1595
||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| |||
Sbjct 1557 GGAGCTTGTATTTCTGCGGTAATCAGTTTCTTTGATAGAA-CAAACCTTTTAAGATTAA- 1614
Query 1596 GTTGAACATAACCATTTCTTTGTTTGAGCTAT--CTTCTGCAACATTTTGC-GCATGGAA 1652
| ||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||
Sbjct 1615 ----A-CATAATCATTTCTTTGTTTGAGATATATCTTCTGCAACATTTT-CTGCATGGAA 1668
Query 1653 AAGGCAGTCTCACATGATTTTGCTGCCGACTTTTTCATATATATCCACTTCATGTGATGA 1712
| ||| ||| |||||||||||||| | ||||| ||||||||||||||||||| |||||
Sbjct 1669 A-GGCCGTCCCACATGATTTTGCTACTGACTT---CATATATATCCACTTCATGCGATGA 1724
Query 1713 CTCTTATATGGACTGCTAACTTTAGCATGGTTAAATAACATGAATCTTATAT 1764
||||||||| |||| ||||||||||||| |||| |||||||||||||||||
Sbjct 1725 ATCTTATATGAACTGATAACTTTAGCATGATTAA-TAACATGAATCTTATAT 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5