BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473604 Length=1104 Score E Sequences producing significant alignments: (Bits) Value AT1G34575.1 | Symbols: | FAD-binding Berberine family protein ... 1085 0.0 AT1G30710.1 | Symbols: | FAD-binding Berberine family protein ... 745 0.0 > AT1G34575.1 | Symbols: | FAD-binding Berberine family protein | chr1:12657149-12658732 REVERSE LENGTH=1584 Length=1584 Score = 1085 bits (587), Expect = 0.0 Identities = 714/775 (92%), Gaps = 9/775 (1%) Strand=Plus/Plus Query 1 ATGAAATCTTCAACAACTCAAACCATAATCGTCACATTTTTTCTCCTTATAATTCCAACA 60 |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 1 ATGAAATCTTCAACAACTCAAACCCTAATCTTCACAGTTTTTCTCCTTCTAATTCCAACA 60 Query 61 TCATTCGCAGCACCACCAAAACTCGAAGACAGTTTCACACAATGTCTCACCACTTTCAAA 120 |||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||| Sbjct 61 TCATTCGCAGCACCACCAAAACTCAAAGACAGTTTCACACAATGTGTAACCGTTTTCAAA 120 Query 121 CCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAAGAAAACCCTAACTTC 180 |||| || | ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 CCTT-----CC---G-TCCCAATCCAAAACTTCACATACACGCAACAAAACCCTAACTTC 171 Query 181 CTCATCATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTACACGTAAA 240 |||| ||||||||||||||||||||| || ||||||||||||||||||| |||||||||| Sbjct 172 CTCACCATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAA 231 Query 241 CCGGTGGCGATCGTGGCTGCGGCTCACTTCACTCATATCCAAGCTACAATAAACTGCGCC 300 ||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 232 CCGGTAGCGATCGTAGCCGCGGCTCACTTCACTCATATCCAAGCTACAATCAACTGCGCC 291 Query 301 AAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGATGGAATGTCT 360 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 292 AAAAAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCT 351 Query 361 TATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCAATCGAGATT 420 |||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 352 TATTTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTACGTGCAATTGAGATC 411 Query 421 GATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAGATCTACTAC 480 ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 412 GATCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC 471 Query 481 AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTGCCCCGGTCTC 540 ||||||||||| ||||||||||||||||| || ||||| || |||||||| ||||||||| Sbjct 472 AACGTTGCCAATAAAAGCAACAACCTCCGTGGTTTCCCCGCTGGAATCTGTCCCGGTCTC 531 Query 541 GGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 600 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 591 Query 601 TCTATTGATAACAATATAGACGCTAAGACTGTTGATGCTAACGCAAGAGTATTGGACCGG 660 || |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 592 TCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCGG 651 Query 661 AGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCGCTAGTTTCTGT 720 || || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 652 AGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTGT 711 Query 721 GTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTACAGTCT 775 ||||||||||| ||||||||||| || ||||| || ||||||||||||||||||| Sbjct 712 GTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGAGAAAGTTACAGTCT 766 Score = 300 bits (162), Expect = 2e-80 Identities = 176/183 (96%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 1341 Query 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1342 CAAACGGAAAGAGTGTTCGAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 1401 Query 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026 ||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 1402 TTTTTGAACTACAGAGATATTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGT 1461 Query 1027 AAA 1029 ||| Sbjct 1462 AAA 1464 Score = 113 bits (61), Expect = 3e-24 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1031 GTTGGTTCAGGTTAAGACTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGAGCAT 1090 ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct 1503 GTTGGTTCAGGTTAAGACTAGAGTTGATCCGGACAACATTTTCCGGTACGAGCAGAGCAT 1562 Query 1091 TCCAGTGCAC 1100 |||||||||| Sbjct 1563 TCCAGTGCAC 1572 > AT1G30710.1 | Symbols: | FAD-binding Berberine family protein | chr1:10895280-10897109 FORWARD LENGTH=1830 Length=1830 Score = 745 bits (403), Expect = 0.0 Identities = 662/786 (84%), Gaps = 22/786 (3%) Strand=Plus/Plus Query 1 ATGAAATCTTC-AACAACTCAAACCATAATCGTCA-CATTTTTTCTCCTTATAATTCCAA 58 |||| ||| || ||||||||||||| ||||| ||| || ||||||| |||| ||| |||| Sbjct 1 ATGACATC-TCTAACAACTCAAACCCTAATCATCACCA-TTTTTCTTCTTACAATCCCAA 58 Query 59 CATCATTCGCAGCACCACCAAAACTCGAAGACAG-TTTCACACAATGTC-TCACC-ACTT 115 |||| |||||| |||||||| |||||||||| | |||| ||||||| | ||||| | || Sbjct 59 CATCCTTCGCATCACCACCATCACTCGAAGAC-GTTTTCGCACAATG-CGTCACCGA-TT 115 Query 116 TCAAACCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAA-GAAAACCCT 174 | |||||||| | ||||| | |||||||||||||| || |||||| ||| | || |||| Sbjct 116 TTAAACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACG-AAGCCCT 174 Query 175 AACTTCCTCATC-ATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTAC 233 || ||||||| | || || |||||||||||||||||||| |||||||||||| || || Sbjct 175 AATTTCCTCA-CAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGAC 233 Query 234 ACGTAAACCGGTGGCGATCGTGGCTGCGGCTCACT-TCACTCATATCCAAGCTACAATAA 292 ||||||||| || ||||| || ||||| || | | ||||||| ||||| |||||||| Sbjct 234 ACGTAAACCCGTAGCGATTGTAGCTGCCGCGGA-TGTCACTCACATCCAGGCTACAAT-C 291 Query 293 AC-TGCGCCAAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGAT 351 || || ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| Sbjct 292 ACTTGTGCCAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGAC 351 Query 352 GGAATGTCTTATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCA 411 || ||||| |||||||| ||| | |||||||| ||||| |||||||| ||||| || || Sbjct 352 GGTATGTCGTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCT 411 Query 412 ATCGAGATTGATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAG 471 ||| | || ||||||||||| || |||||||| |||||||| ||||| || || |||||| Sbjct 412 ATCAATATAGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAG 471 Query 472 ATCTACTAC-AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTG 530 ||||||||| | || |||||||||||||| ||||||| || || ||||| |||||||| Sbjct 472 ATCTACTACGGA-GTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTG 530 Query 531 CCCCGGTCTCGGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590 || ||| | || ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 531 TCCTGGTTTAGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590 Query 591 ATACGGTTTATCTATTGATAACAATATAGACGCTAAGA-CTGTTGATGCTAACGCAAGAG 649 |||||||||||| || ||||||| |||||||||||||| | ||||| ||||| | ||||| Sbjct 591 ATACGGTTTATCGATCGATAACATTATAGACGCTAAGATC-GTTGACGCTAAAGGAAGAG 649 Query 650 TATTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCG 709 | ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| | Sbjct 650 TTTTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTG 709 Query 710 CTAGTTTCTGTGTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTA 769 |||||||||||||||||||||| |||||||| || ||||||||||| || | ||||| | Sbjct 710 CTAGTTTCTGTGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCCAGCTAAAGTCA 769 Query 770 CAGTCT 775 |||||| Sbjct 770 CAGTCT 775 Score = 244 bits (132), Expect = 1e-63 Identities = 166/183 (91%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906 ||||||||| || | |||||||||||||||||||||| || ||||| |||||||||||| Sbjct 1294 ATTCAGTACGCAGCAAACTGGTTCGTGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGC 1353 Query 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966 ||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||| ||| Sbjct 1354 CAGACAGAAAGATTGTTCGAGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCG 1413 Query 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026 ||||||||||||||||||||||||||||| |||| ||| || || ||||||||||||||| Sbjct 1414 TTTTTGAACTATAGAGACGTTGACATTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGT 1473 Query 1027 AAA 1029 ||| Sbjct 1474 AAA 1476 Score = 91.6 bits (49), Expect = 1e-17 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 1028 AAAGTTGGTTCAGGTTAAGA-CTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGA 1086 ||| |||||| || | |||| | |||||| |||||||||||||||||||||||||||||| Sbjct 1513 AAA-TTGGTTAAGATCAAGAGC-AGAGTTGATCCCGACAACTTTTTCCGGTACGAGCAGA 1570 Query 1087 GCATTCCAGTGC 1098 |||||||||||| Sbjct 1571 GCATTCCAGTGC 1582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54116187510 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5