BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473604
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34575.1 | Symbols: | FAD-binding Berberine family protein ... 1085 0.0
AT1G30710.1 | Symbols: | FAD-binding Berberine family protein ... 745 0.0
> AT1G34575.1 | Symbols: | FAD-binding Berberine family protein
| chr1:12657149-12658732 REVERSE LENGTH=1584
Length=1584
Score = 1085 bits (587), Expect = 0.0
Identities = 714/775 (92%), Gaps = 9/775 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCTTCAACAACTCAAACCATAATCGTCACATTTTTTCTCCTTATAATTCCAACA 60
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 1 ATGAAATCTTCAACAACTCAAACCCTAATCTTCACAGTTTTTCTCCTTCTAATTCCAACA 60
Query 61 TCATTCGCAGCACCACCAAAACTCGAAGACAGTTTCACACAATGTCTCACCACTTTCAAA 120
|||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct 61 TCATTCGCAGCACCACCAAAACTCAAAGACAGTTTCACACAATGTGTAACCGTTTTCAAA 120
Query 121 CCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAAGAAAACCCTAACTTC 180
|||| || | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CCTT-----CC---G-TCCCAATCCAAAACTTCACATACACGCAACAAAACCCTAACTTC 171
Query 181 CTCATCATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTACACGTAAA 240
|||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||
Sbjct 172 CTCACCATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAA 231
Query 241 CCGGTGGCGATCGTGGCTGCGGCTCACTTCACTCATATCCAAGCTACAATAAACTGCGCC 300
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 232 CCGGTAGCGATCGTAGCCGCGGCTCACTTCACTCATATCCAAGCTACAATCAACTGCGCC 291
Query 301 AAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGATGGAATGTCT 360
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 292 AAAAAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCT 351
Query 361 TATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCAATCGAGATT 420
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 352 TATTTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTACGTGCAATTGAGATC 411
Query 421 GATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAGATCTACTAC 480
||||| ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 412 GATCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC 471
Query 481 AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTGCCCCGGTCTC 540
||||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||
Sbjct 472 AACGTTGCCAATAAAAGCAACAACCTCCGTGGTTTCCCCGCTGGAATCTGTCCCGGTCTC 531
Query 541 GGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 591
Query 601 TCTATTGATAACAATATAGACGCTAAGACTGTTGATGCTAACGCAAGAGTATTGGACCGG 660
|| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 592 TCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCGG 651
Query 661 AGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCGCTAGTTTCTGT 720
|| || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 652 AGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTGT 711
Query 721 GTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTACAGTCT 775
||||||||||| ||||||||||| || ||||| || |||||||||||||||||||
Sbjct 712 GTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGAGAAAGTTACAGTCT 766
Score = 300 bits (162), Expect = 2e-80
Identities = 176/183 (96%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 1341
Query 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CAAACGGAAAGAGTGTTCGAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 1401
Query 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026
||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 1402 TTTTTGAACTACAGAGATATTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGT 1461
Query 1027 AAA 1029
|||
Sbjct 1462 AAA 1464
Score = 113 bits (61), Expect = 3e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1031 GTTGGTTCAGGTTAAGACTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGAGCAT 1090
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1503 GTTGGTTCAGGTTAAGACTAGAGTTGATCCGGACAACATTTTCCGGTACGAGCAGAGCAT 1562
Query 1091 TCCAGTGCAC 1100
||||||||||
Sbjct 1563 TCCAGTGCAC 1572
> AT1G30710.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10895280-10897109 FORWARD LENGTH=1830
Length=1830
Score = 745 bits (403), Expect = 0.0
Identities = 662/786 (84%), Gaps = 22/786 (3%)
Strand=Plus/Plus
Query 1 ATGAAATCTTC-AACAACTCAAACCATAATCGTCA-CATTTTTTCTCCTTATAATTCCAA 58
|||| ||| || ||||||||||||| ||||| ||| || ||||||| |||| ||| ||||
Sbjct 1 ATGACATC-TCTAACAACTCAAACCCTAATCATCACCA-TTTTTCTTCTTACAATCCCAA 58
Query 59 CATCATTCGCAGCACCACCAAAACTCGAAGACAG-TTTCACACAATGTC-TCACC-ACTT 115
|||| |||||| |||||||| |||||||||| | |||| ||||||| | ||||| | ||
Sbjct 59 CATCCTTCGCATCACCACCATCACTCGAAGAC-GTTTTCGCACAATG-CGTCACCGA-TT 115
Query 116 TCAAACCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAA-GAAAACCCT 174
| |||||||| | ||||| | |||||||||||||| || |||||| ||| | || ||||
Sbjct 116 TTAAACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACG-AAGCCCT 174
Query 175 AACTTCCTCATC-ATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTAC 233
|| ||||||| | || || |||||||||||||||||||| |||||||||||| || ||
Sbjct 175 AATTTCCTCA-CAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGAC 233
Query 234 ACGTAAACCGGTGGCGATCGTGGCTGCGGCTCACT-TCACTCATATCCAAGCTACAATAA 292
||||||||| || ||||| || ||||| || | | ||||||| ||||| ||||||||
Sbjct 234 ACGTAAACCCGTAGCGATTGTAGCTGCCGCGGA-TGTCACTCACATCCAGGCTACAAT-C 291
Query 293 AC-TGCGCCAAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGAT 351
|| || ||||| ||||| ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 292 ACTTGTGCCAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGAC 351
Query 352 GGAATGTCTTATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCA 411
|| ||||| |||||||| ||| | |||||||| ||||| |||||||| ||||| || ||
Sbjct 352 GGTATGTCGTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCT 411
Query 412 ATCGAGATTGATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAG 471
||| | || ||||||||||| || |||||||| |||||||| ||||| || || ||||||
Sbjct 412 ATCAATATAGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAG 471
Query 472 ATCTACTAC-AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTG 530
||||||||| | || |||||||||||||| ||||||| || || ||||| ||||||||
Sbjct 472 ATCTACTACGGA-GTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTG 530
Query 531 CCCCGGTCTCGGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590
|| ||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCCTGGTTTAGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590
Query 591 ATACGGTTTATCTATTGATAACAATATAGACGCTAAGA-CTGTTGATGCTAACGCAAGAG 649
|||||||||||| || ||||||| |||||||||||||| | ||||| ||||| | |||||
Sbjct 591 ATACGGTTTATCGATCGATAACATTATAGACGCTAAGATC-GTTGACGCTAAAGGAAGAG 649
Query 650 TATTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCG 709
| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
Sbjct 650 TTTTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTG 709
Query 710 CTAGTTTCTGTGTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTA 769
|||||||||||||||||||||| |||||||| || ||||||||||| || | ||||| |
Sbjct 710 CTAGTTTCTGTGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCCAGCTAAAGTCA 769
Query 770 CAGTCT 775
||||||
Sbjct 770 CAGTCT 775
Score = 244 bits (132), Expect = 1e-63
Identities = 166/183 (91%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906
||||||||| || | |||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1294 ATTCAGTACGCAGCAAACTGGTTCGTGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGC 1353
Query 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966
||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 1354 CAGACAGAAAGATTGTTCGAGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCG 1413
Query 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026
||||||||||||||||||||||||||||| |||| ||| || || |||||||||||||||
Sbjct 1414 TTTTTGAACTATAGAGACGTTGACATTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGT 1473
Query 1027 AAA 1029
|||
Sbjct 1474 AAA 1476
Score = 91.6 bits (49), Expect = 1e-17
Identities = 65/72 (90%), Gaps = 3/72 (4%)
Strand=Plus/Plus
Query 1028 AAAGTTGGTTCAGGTTAAGA-CTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGA 1086
||| |||||| || | |||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 1513 AAA-TTGGTTAAGATCAAGAGC-AGAGTTGATCCCGACAACTTTTTCCGGTACGAGCAGA 1570
Query 1087 GCATTCCAGTGC 1098
||||||||||||
Sbjct 1571 GCATTCCAGTGC 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5