BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473605
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34580.1 | Symbols: | Major facilitator superfamily protein... 2418 0.0
> AT1G34580.1 | Symbols: | Major facilitator superfamily protein
| chr1:12660551-12663870 FORWARD LENGTH=1918
Length=1918
Score = 2418 bits (1309), Expect = 0.0
Identities = 1541/1652 (93%), Gaps = 19/1652 (1%)
Strand=Plus/Plus
Query 1 AATGTATTATCTTTGTTCATTTGGTTTT---ACGATTAAAAAAC-----AACAACAATTC 52
|||||||| ||||||||||||||||||| || | ||||||| || |||| |||
Sbjct 1 AATGTATTCTCTTTGTTCATTTGGTTTTACAACCAAAAAAAAACAAAAAAAAAACACTTC 60
Query 53 ATTTGTAAGACATAAGCAAAATGG-CTATCGGAGGATTGGCTCTTGATGTCTCCGGCGCC 111
|| |||||||||||||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 61 ATGCGTAAGACATAAGCAAAATGGCCGGT-GGAGGATTGGCTCTTGATGTCTCCAGCGCC 119
Query 112 GGAAACATAGATGCCAAGATCACAACCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 171
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 GGAAACATTGATGCCAAGATCACAGCCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 179
Query 172 TGTGGTCTCATTTTTGGCTACGATATCGGAATATCAGGGGGTGTGACAACAATGAAGCCG 231
|||||||||||||||||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 180 TGTGGTCTCATTTTTGGCTATGACATCGGAATCTCAGGGGGTGTGACGACTATGAAGCCG 239
Query 232 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTG 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTC 299
Query 292 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 359
Query 352 TTAGTCGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGCACCACCATG 411
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TTAGTAGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGAACCACCATG 419
Query 412 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCCCTGATCAATGGCTTAGCTGCCAACATC 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 420 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCTCTGATCAATGGCTTAGCTGCTAACATC 479
Query 472 GCCATGCTTATCTCCGGTCGGATTTTGTTAGGATTTGGTGTTGGCTTCACAAACCAGGCA 531
|||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 480 GCCATGCTCATCTCCGGTCGGATTTTGCTAGGATTTGGTGTCGGTTTCACCAACCAGGCG 539
Query 532 GCTCCGGTGTATTTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTTAAC-TCCGG 590
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 540 GCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATC-GG 598
Query 591 CTTT-CAATTCTTCATCGGTGTCGGAGTAGTAGCAGCCAATCTAATAAACTACGGTACGG 649
|||| || | ||||||| || | |||||||||||||||||||||||||| |||||||| |
Sbjct 599 CTTTTCA-TGCTTCATCAGTATGGGAGTAGTAGCAGCCAATCTAATAAATTACGGTACCG 657
Query 650 ACAGCCACCGTAACGGCTGGCGTATCTCTTTAGGTCTAGCTGCTGTACCAGCCGCGATCA 709
| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 ATAGTCACCGTAACGGCTGGCGTATCTCGCTAGGTCTAGCTGCTGTACCAGCCGCGATCA 717
Query 710 TGACCGTGGGATGTCTATTCATTTCCGATACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 769
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 TGACCGTGGGATGTCTATTCATTTCCGACACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 777
Query 770 ACGATCAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 829
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACGATGAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 837
Query 830 AAATTGAGCTAGCAGAGTTG-TCTAGATCAAGCCAACTAGCCATTGAGGCTAGAGCCGAA 888
||| ||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||
Sbjct 838 AAACCGAGCTAGCAGAGTTGGT-TAGGTCAAGCCAGCTAGCCATTGAGGCTAGAGCCGAA 896
Query 889 CCGTTTATGAAGACGATATTGGAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGCG 948
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 897 CTGTTTATGAAGACGATATTGCAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGTG 956
Query 949 ATACCATGTTTTCAACAGTTAACCGGGATCACGGTTAATGCGTTCTATGCGCCGGTTCTG 1008
||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||
Sbjct 957 ATACCATGTTTTCAACAGTTAACTGGAATAACGGTGAACGCGTTCTATGCGCCGGTTCTG 1016
Query 1009 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTGATACTCGGGTTG 1068
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTCATACTCGGGTTT 1076
Query 1069 GTTAATCTTGGTTCGCTTCTTGTCTCAACCATGGTTATTGACCGGTTTGGTAGACGGTTT 1128
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1077 GTTAATCTTGGTTCGCTTCTTCTCTCAACAATGGTTATTGACCGGTTTGGTAGACGGTTT 1136
Query 1129 TTGTTCATTGCTGGTGGTATTCAGATGTTTCTCTGCCAGATTGCAGTGGCTGTGTTACTA 1188
|||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1137 TTGTTCATTGCTGGCGGTATTCTGATGCTTCTCTGTCAGATTGCAGTGGCTGTGTTACTA 1196
Query 1189 GCAGTGACAGTGGGAGCCAACGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1248
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCTGTGACAGTGGGAGCCACCGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1256
Query 1249 GTGGTGTTACTTTGCATATACTCGGCTGGGTTTGGATGGTCGTGGGGGCCATTGAGCTGG 1308
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1257 GTGGTGTTACTTTGCATATACGCAGCTGGGTTTGGATGGTCGTGGGGGCCATTAAGCTGG 1316
Query 1309 CTTGTCCCGAGTGAGATATTCCCACTCAAGATGCGACCGGCTGGTCAAAGCTTAAGCGTC 1368
|||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1317 CTTGTCCCAAGTGAGATATTCCCACTCAAGATACGACCAGCTGGTCAGAGCTTAAGCGTT 1376
Query 1369 GCCGTGAACTTCGCCGCAACGTTCGCTCTCTCTCAGACGTTCTTAGCAACGCTCTGCGAT 1428
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1377 GCCGTGAACTTCGCCGCAACGTTTGCTCTCTCTCAAACGTTCTTAGCAACGCTCTGCGAT 1436
Query 1429 TTCAAGTACGGTGCGTTCTTGTTTTATGGCGGTTGGATCTTTAGTATGACGGTGTTCGTC 1488
|||||||||||||| ||||||||||| |||||||||||||||| |||||| | ||||||
Sbjct 1437 TTCAAGTACGGTGCTTTCTTGTTTTACGGCGGTTGGATCTTTACAATGACGATATTCGTC 1496
Query 1489 ATCATGTTCTTGCCGGAGACCAAAGGGATCCCTGTGGATTCTATGTATCAAGTTTGGGAG 1548
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1497 ATCATGTTCTTGCCCGAGACCAAAGGGATACCTGTGGATTCTATGTATCAAGTTTGGGAG 1556
Query 1549 AAGCATTGGTATTGGCAACGGTTCACTAAACGGACGTCAA-TATGAAAGATACAATATTG 1607
||||||||||||||||||||||| ||||||| |||||||| | | |||||| ||||||||
Sbjct 1557 AAGCATTGGTATTGGCAACGGTTTACTAAACCGACGTCAACT-TAAAAGATGCAATATTG 1615
Query 1608 CTATGGTTTA-CATTTTCCATGGATTATGTTT 1638
| |||| || ||||||| |||||||||||||
Sbjct 1616 CAATGGGTTCGCATTTTCAATGGATTATGTTT 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5