BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473606

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34640.1 | Symbols:  | peptidases | chr1:12687552-12688543 R...   723    0.0  


> AT1G34640.1 | Symbols:  | peptidases | chr1:12687552-12688543 
REVERSE LENGTH=603
Length=603

 Score =  723 bits (391),  Expect = 0.0
 Identities = 433/453 (96%), Gaps = 4/453 (1%)
 Strand=Plus/Plus

Query  2    TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTTAAAAAAGCAACTTCAACT  61
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  15   TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTT-ATAAAGCAACTTCAACT  73

Query  62   AATCCCGTTTTAAATACAAGTTATCTACTCTCTCTTAGCCATAAATGGGAAACGAAGCAG  121
            |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  74   AATCCCGTTTTAAATATAAGCTATCTACTCTCTCTTAGCCAT-AATGGGAAACGAAGCAG  132

Query  122  CATTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGT-GGTGATATGGTTATGGACA  180
            || ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct  133  CACTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGTAGTTG-TATGGTTATGGACA  191

Query  181  CAGTCTTTAAAGAAGACTGTTGTTACTTACGCCGTCGGTATTTCGCTTATCGGTGGCATA  240
            ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct  192  CAGTCTTTAAAGAAGACGGTTGTTACTTACGCCGTCGGTATTTCTCTTATTGGCGGCATA  251

Query  241  CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGATATCCTGTCACC  300
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  252  CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGCTATCCTGTCACC  311

Query  301  GCCGAGGAAAGAGCCGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC  360
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  GCCGAGGAAAGATCAGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC  371

Query  361  CCTATGAGGATGGTTTTATACGGTACGGTGTATGGATATGCAGTGTATAGGTGGTGGATG  420
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  372  CCTATGAGGATGGTTTTATACGGCACGGTCTATGGATATGCAGTGTATAGGTGGTGGATG  431

Query  421  TTCGTGTCAAATTTTTGAAGCCATATTGTATTT  453
            ||||| ||||||| |||||||||||||||||||
Sbjct  432  TTCGTATCAAATTATTGAAGCCATATTGTATTT  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5