BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473608
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34670.1 | Symbols: AtMYB93, MYB93 | myb domain protein 93 |... 1796 0.0
AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 | ch... 213 3e-54
AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30 |... 95.3 1e-18
> AT1G34670.1 | Symbols: AtMYB93, MYB93 | myb domain protein 93
| chr1:12709128-12710423 FORWARD LENGTH=1098
Length=1098
Score = 1796 bits (972), Expect = 0.0
Identities = 1063/1106 (96%), Gaps = 10/1106 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
Query 61 GAAGATCAAAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCCCTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAAGATCAAAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCTCTC 120
Query 121 CCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTAT 180
Query 181 TTGAGACCAGACATCAAAAGAGGCAAGTTTTCCTCCGAAGAAGAGCAAACAATCCTCCAT 240
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 181 TTGAGACCAGACATCAAAAGAGGAAAGTTTTCAGCCGAAGAAGAGCAAACAATCCTCCAT 240
Query 241 CTCCACTCCATTCTCGGGAATAAATGGTCAGCTATTGCCACGCATTTGCAAGGTCGTACA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTCCACTCCATTCTCGGGAATAAATGGTCAGCTATTGCGACGCATTTGCAAGGTCGTACA 300
Query 301 GATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAAGAAATTGATCCAGATGGGA 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAATGAGATAAAAAACTTTTGGAACACACATCTAAAGAAGAAATTGATCCAGATGGGG 360
Query 361 ATCGATCCCGTGACTCATCAGCCAAGAACCGACCTCTTCGCAAGCTTACCTCAGCTCATA 420
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATCGATCCTGTGACTCATCAGCCAAGAACCGACCTCTTCGCAAGTTTACCTCAGCTCATA 420
Query 421 GCCTTGGCAAATCTAAAAGACCTGATCGAACAAACATCACAATTTTCATCCATTCAAGCC 480
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
Sbjct 421 GCCTTGGCAAATCTAAAAGACCTAATCGAACAAACATCACAATTCTCATCCATGCAAGGC 480
Query 481 GAAGCAGCCCAACTAGCCAAGCTACAATATCTCCAATGTATGCTTAATTCTTCGGCTTCA 540
|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 481 GAAGCAGCCCAACTAGCCAATCTACAATATCTCCAACGTATGTTTAATTCTTCGGCTTCA 540
Query 541 TTAACCAACAACAACAGCAACAACAATAGCCCGAGTAGTATTCTCGATATCGATCAGAAC 600
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 541 TTAACCAACAACAACGGCAACAATTTTAGCCCGAGTAGTATTCTCGATATCGATCAGCAC 600
Query 601 CATGCCATGAACCTCTTAAACTCCATGGTCTCTTGGAACAAAGATCAACA-CCCGACTTT 659
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 601 CATGCCATGAACCTCTTAAACTCCATGGTCTCTTGGAACAAAGATCAAAACCCCG-CTTT 659
Query 660 TGATCCGGTTCTTGAACTCGAGGATAACAATCAAAATCAAGATTTATTTCCACTAGGGTC 719
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 660 TGATCCGGTTCTTGAACTCGAGGCTAACGATCAAAATCAAGATTTATTTCCACTAGGGTT 719
Query 720 TATCATTGATCCAA-CCACCCAACCACTCCAACAACAAAAATACCATTTAAACAATAGTC 778
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATCATTGAT-CAACCCACCCAACCACTCCAACAACAAAAATACCATTTAAACAATAGTC 778
Query 779 CTAGTCCTAGGGAGCTACCATCACAAGGTGACCCACTTCTTGATCATGTCCCTTTCAGTC 838
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CTAG---T---GAGCTACCATCGCAAGGTGACCCACTTCTTGATCATGTCCCTTTCAGTC 832
Query 839 TCCAAACACCTTTGAATAGTGAGGATCACTTTATAGATAATTTGGTCAAACATCCAACTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCCAAACACCTTTGAATAGTGAGGATCACTTTATAGATAATTTGGTCAAACATCCAACTG 892
Query 899 ATCATGAGCATGAACATGATGACAATCCATCTTCATGGGTTCTCCCTTCTCTTATAGACA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ATCATGAGCATGAACATGATGACAATCCATCTTCATGGGTTCTCCCTTCTCTTATAGACA 952
Query 959 ACAACCCTAAAAATGCCACGTCTTCTCTTCCACACAACAATCCGGCGGATGCAAGTAGCA 1018
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ATAACCCTAAAACTGTCACGTCTTCTCTTCCACACAACAATCCGGCGGATGCAAGTAGCA 1012
Query 1019 GCTCAAGCTATGGAGGTTGTGACGCTGCGTCATTTTATTGGCCTGACTTTTGCTTCGACG 1078
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1013 GCTCAAGCTATGGAGGTTGTGAAGCTGCGTCGTTTTATTGGCCTGACATTTGCTTCGACG 1072
Query 1079 AAAGCCTCATGAACGTTATTTCTTAG 1104
||||||||||||||||||| ||||||
Sbjct 1073 AAAGCCTCATGAACGTTATATCTTAG 1098
> AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 |
chr5:5514884-5516936 FORWARD LENGTH=1284
Length=1284
Score = 213 bits (115), Expect = 3e-54
Identities = 313/407 (77%), Gaps = 19/407 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
|||||| | || || |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 72 ATGGGGCGATCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAAGAG 131
Query 61 GAAGATCA-AAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCCCT 119
|| ||| | ||| || || ||| ||||||| |||||||| ||||| ||||||||||| ||
Sbjct 132 GAGGATGATAAA-CTGATAGATCACATTCAAAAACATGGCCATGGCAGCTGGAGAGCTCT 190
Query 120 CCCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTA 179
|| |||| || | ||| || | || ||||||||||||||| | || ||||| || ||
Sbjct 191 TCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAACTA 250
Query 180 TTTGAGACCAGACATCAAAAGAGGCAAGTTTTC-CTCC-GAAGAAGAGCAAACAATCCTC 237
|||||||| |||||||| ||||| || ||| | || || ||||| ||||| || ||
Sbjct 251 CTTGAGACCTGACATCAAGAGAGGAAA-TTT-CACTGAAGAGGAAGAACAAACTATTATC 308
Query 238 CATCTCCACTCCATTCTCGGGAATAAATGGTCAG-CTATTGCCACGCA-T-TTGCAAGGT 294
| ||||| ||| |||| || || || ||||| | | || ||| | | | || | ||
Sbjct 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTC-GTCGATAGCCG-GTAATCTTCCT-GGA 365
Query 295 CGTACAGATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAA-GAAA-TTGATCC 352
| || || ||||| || ||||||| ||||||||||||| | | ||| |||| || |||
Sbjct 366 AGAACGGACAATGAAATAAAAAACTATTGGAACACACATTTGA-GAAAGAAACTTC-TCC 423
Query 353 AGATGGGAATCGATCCCGTGACTCATCAG-CCAAGAACCGACC-TCT 397
| ||||| || ||||| ||||| ||| || ||||||||||||| |||
Sbjct 424 AAATGGGGATTGATCCGGTGACCCAT-AGGCCAAGAACCGACCATCT 469
> AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30
| chr3:10911157-10913190 FORWARD LENGTH=1592
Length=1592
Score = 95.3 bits (51), Expect = 1e-18
Identities = 263/361 (73%), Gaps = 32/361 (9%)
Strand=Plus/Plus
Query 1 ATGGGGAGGTCGCCTTGTTGCGAC-GAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGA 59
|||| |||| | |||||||| ||| || | || | |||||||||||||||||||||||
Sbjct 287 ATGGTGAGGCCTCCTTGTTGTGACAAAGGA-GGAGTGAAGAAAGGGCCATGGACTCCTGA 345
Query 60 AGAAGATCAAAAGCTTATTGA-TTACATTCATA-AACATGGTCATGG-AAGCTGGAGAGC 116
||||||| | | ||| | | |||||| || | ||||||||| ||| || ||||||||
Sbjct 346 AGAAGAT-ATCATTTTAGTCACTTACATCCA-AGAACATGGTCCTGGTAAT-TGGAGAGC 402
Query 117 CCT-CC--CCAAG-CTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGA 172
| || |||| || | | | | ||| || | |||||||||||||| || ||||
Sbjct 403 TGTTCCTACCAATACTGG--GCT--GCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGA 458
Query 173 CAAATTATTTGAGACCAG-ACATCAAAAGAGGCAAGTTTTCCTCCGAAGAAGA-GCAAAC 230
|||| ||||| || |||| | |||||||||||||| ||| | | ||| | || | |||
Sbjct 459 CAAACTATTTAAGGCCAGGA-ATCAAAAGAGGCAA-TTT-CA-CAGAACATGAAGAAAAG 514
Query 231 A--ATCCTCCATCTCCACTCCATTCTCGGGAA-TAAATGGTCAGCTATTGCCACGCAT-T 286
| || | |||||||| || | || |||| || |||| | || ||||| | || |
Sbjct 515 ATGATTGTTCATCTCCAAGCCCT-CTTAGGAAATAGATGGGCTGCAATTGCGTCATATCT 573
Query 287 TGCA-AG-GTCGTACAGATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAAGAA 344
| || | | | ||||| ||||| || || |||| ||||||||| ||| | ||||||||
Sbjct 574 TCCACAAAG--G-ACAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAAGAA 630
Query 345 A 345
|
Sbjct 631 A 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5