BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473609
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34750.1 | Symbols: | Protein phosphatase 2C family protein... 1914 0.0
> AT1G34750.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:12736092-12738196 REVERSE LENGTH=1515
Length=1515
Score = 1914 bits (1036), Expect = 0.0
Identities = 1180/1247 (95%), Gaps = 20/1247 (2%)
Strand=Plus/Plus
Query 1 AAACAAGAGGACAAAGCCAGAGCGACTCTGCTTTTAAGACACGGCAAAAAAGTCAACCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAACAAGAGGACAAAGCCAGAGCGACTCTGCTTTTAAGACACGGCAAAAAAGTCAACCAA 68
Query 61 CGAAACCCAATAACAAGGAAAGAGATTTGTTTTTCATTTTTAATGGaaaaaaaaaaacca 120
|| |||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 69 CG-AACCCAATAACAAGGAAAGAGATTTGTTTTTCATTTCTAATGG-------AAAA--A 118
Query 121 aaacagcaaaaaTTGAAGTCTACtcgtcgtcgtcgtcgtcgtcTTCCACTAATTCCGTGG 180
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 119 AAACAGCAAAAATTGAAGTCTACTCGTCGTAGTAGTCGTCGTCTTCCACTAATTCCGTGG 178
Query 181 --TTTTTATCGAAGACTTTTGAATAAAGTACATTTGCAGAGTCTATCAATAACCCTTTCG 238
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 TTTTTTTATCGAAGACTTTTGAATAAAGTACATTTGCAGAGTCTGTCAATAACCCTTTCT 238
Query 239 TCACGGTATTGCTCTCAAGCCGCGTACTGGTAGACTCCAAAATTATCCTTTCTTTATGGT 298
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 239 TCACGGTATTGCTCTCAAGCCGCGTACTGGTAGGCTCCAAAATTATCCCTTCTTTATGGT 298
Query 299 TTTTGGAATCTGGGTTCTCCGATTTTGAGGTAATCTTGAAATC-TTGA-AAGAGAAGAGA 356
|||||||| |||||||||||||||||||||| | |||||||| |||| ||| |
Sbjct 299 TTTTGGAACCTGGGTTCTCCGATTTTGAGGT--TGTTGAAATCTTTGAGTAGATTTTTG- 355
Query 357 TCAG-ACATCTATCCTCTCATGGCGAAGTTATGTTGCTTCGGTTCTTCAGACTACGATCT 415
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 T-GGAACATCT-GACTCTCATGGCGAAGTTATGTTGCTTCGGTTCTTCAGACTACGATCT 413
Query 416 TGTGGTTGGGAGGGCGTCAACTAGTTCTGGAAAAGGGAAAAATAGCGACGGCGAGATCAA 475
||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 414 TGTGGTTGGGAGGGCATCGACTAGTTCTGGAAAAGGGAGAAATAACGACGGCGAGATTAA 473
Query 476 ATTCGGTTACAGCTTAGTGAAAGGGAAAGCTAATCATCCAATGGAGGATTATCATGTGTC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATTCGGTTACAGCTTAGTGAAAGGGAAAGCTAATCATCCAATGGAGGATTATCATGTGTC 533
Query 536 TAAATTCGTGAAAATAGACGGTAGCGAGCTCGGTTTGTTTGCAATCTACGATGGTCATTT 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 534 TAAATTCGTGAAAATAGACGGTAACGAGCTCGGTTTGTTTGCAATCTACGATGGTCATTT 593
Query 596 GGGTGAACGTGTTCCTGCTTATCTACAGAAGCATTTGTTCTCCAATATCCTTAAAGAGGA 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 594 GGGTGAACGTGTTCCTGCTTATCTACAGAAGCATTTGTTCTCCAATATCCTCAAAGAGGA 653
Query 656 GCAATTTAGGTATGATCCTCACAGATCAATAATTGCTGCCTATGAGAAGACAGACCAAGC 715
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCAGTTTAGGTATGATCCTCAGAGATCAATAATTGCTGCCTATGAGAAGACAGACCAAGC 713
Query 716 CATTCTGTCACATTCTTCTGACTTAGGCCGTGGTGGTTCAACCGCTGTAACCGCTATTCT 775
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 714 CATTCTGTCACATTCTTCTGACTTAGGCCGTGGTGGCTCAACGGCTGTAACCGCTATTCT 773
Query 776 GATGAATGGACGGCGTTTGTGGGTGGCAAATGTGGGTGATTCCCGGGCGGTTTTATCTCA 835
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 774 GATGAATGGACGGCGTTTATGGGTGGCAAATGTGGGTGATTCTCGGGCGGTTCTATCTCA 833
Query 836 AGGAGGTCAGGCTATACAGATGACTATCGATCACGAGCCGCACACTGAAAGGTTGAGCAT 895
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 834 AGGAGGTCAGGCAATACAGATGACTATTGATCATGAGCCGCACACTGAAAGGTTGAGCAT 893
Query 896 CGAGGATAGAGGAGGCTTTGTATCGAACATGCCAGGAGATGTCCCTCGGGTTAACGGGCA 955
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 CGAGGGTAAAGGAGGCTTTGTATCCAACATGCCAGGAGATGTCCCTCGGGTTAACGGGCA 953
Query 956 GCTAGCGGTTTCTCGTGCGTTTGGGGACAAAAGCCTCAAAACACATCTACGGTCAGATCC 1015
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 954 GCTAGCGGTTTCTCGTGCTTTTGGAGACAAAAGCCTCAAAACACATCTACGGTCAGATCC 1013
Query 1016 AGACGTTAAAGATTCATCTATAGATGATCACACAGATGTTCTTGTTCTTGCTAGTGACGG 1075
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGACGTTAAAGATTCATCGATCGATGATCACACAGATGTTCTTGTTCTTGCTAGTGACGG 1073
Query 1076 TCTATGGAAGGTGATGGCTAACCAAGAGGCGATTGATATCGCGAGAAGAATCAAAGATCC 1135
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 TCTATGGAAGGTGATGGCTAACCAAGAGGCGATTGATATTGCGAGAAGAATCAAAGATCC 1133
Query 1136 ACTGAAAGCAGCGAAAGAACTAACAACCGAAGCGCTGAGAAGAGACAGTAAAGACGATAT 1195
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1134 ATTGAAAGCAGCGAAAGAACTAACAACCGAAGCGCTTAGAAGAGACAGTAAAGATGATAT 1193
Query 1196 TTCTTGCATTGTCGTCAGATTAAGGTGATGAAAGATCTTTTGAAACC 1242
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTCTTGCATTGTCGTCAGATTAAGGTGATGAAAGATCTTTTGAAACC 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5