BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473612
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31220.1 | Symbols: | Formyl transferase | chr1:11156802-11... 1605 0.0
> AT1G31220.1 | Symbols: | Formyl transferase | chr1:11156802-11158683
FORWARD LENGTH=1416
Length=1416
Score = 1605 bits (869), Expect = 0.0
Identities = 1084/1182 (92%), Gaps = 37/1182 (3%)
Strand=Plus/Plus
Query 4 ACAAAAACCTCCGATTAGACCGTCGGAATGGAATCACGGGTTTGGTTCTCGAGTCAATTC 63
|||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 236 ACAAAACCCTCTGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCTCTAGTCAATTC 295
Query 64 AACTTCCCGGTGAATTCGCCGTTGAAGACCCGTGAAACCTCGATTGCTCCGTTTACACCT 123
||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 296 AACTTCCCGGTGAATTCACCGTTTAAGACCCGTGAAACCTCGATTGCTCCGCTCACACCT 355
Query 124 CCCCGGAATGTTCTCTCCTTCTCTTTCCCAAGTCACGCAG-GCAGATTTGCGATGAGGAT 182
||||||||||||||||||||||||||| |||| ||||| | |||| ||||||||||||
Sbjct 356 TCCCGGAATGTTCTCTCCTTCTCTTTCCGTAGTCCCGCAGAG-AGATGTGCGATGAGGAT 414
Query 183 TGGACCGCTTGTAAAAGCTGTTTCGTTTGCTACAAAGATAGTAGCGGAGGTCGATGGTTC 242
|| ||||||||||||||||| ||||| | || || |||||||||||||||||||||||||
Sbjct 415 TGTACCGCTTGTAAAAGCTGCTTCGTCTACTCCACAGATAGTAGCGGAGGTCGATGGTTC 474
Query 243 GAGAGACGAGCCTAGAAGGAAGAAGCTTGCTGTGTTTGTTTCGGGAGGTGGTTCGAATTT 302
| |||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 475 GTCTCACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGTCGGGAGGTGGTTCAAATTT 534
Query 303 CAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATGGGGATGTTGTTTTGTTGGT 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATGGTGATGTTGTTTTGTTGGT 594
Query 363 CACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAAGTAATGGAATTCCTGTTTT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAAGTAATGGAATTCCTGTTTT 654
Query 423 AGTATTCCCAAAAGCGAAACGAGAACCAT-TCGATGGACTCTCTCCTTCAGAGCTTGTAG 481
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 655 AGTATTCCCAAAAGCGAAACGAGAACCATCT-GATGGACTCTCTCCTTCAGAACTTGTAG 713
Query 482 ATGTACTTAGGAAATATGGGGTAGACTTTGTTCTTTTAGCTGGATATTTGAAACTTATAC 541
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATGTACTAAGGAAATATGGTGTAGACTTTGTTCTTTTAGCTGGATATTTGAAACTTATAC 773
Query 542 CGGTCGAGCTTGTCCAAGCATTTCCTAAACGGATTCTAAATATTCATCCTGCTCTTCTTC 601
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGGTCGAGCTGGTCCAAGCTTTTCCTAAACGGATTCTAAATATTCATCCTGCTCTTCTTC 833
Query 602 CGGCTTTTGGAGGCAAAGGTCTGTATGGTATAAGAGTGCATAAAGCTGTTCTAAAATCGG 661
||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 834 CGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAAAGTGCATAAAGCTGTTCTAGAATCGG 893
Query 662 GAGCTAGATATTCAGGTCCCACAATTCACTTTGTCGATGAGGAGTACGATACAGGTCGGA 721
||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 894 GAGCTAGATATTCGGGTCCGACAATTCACTTCGTCAATGAGGAGTACGATACAGGTCGGA 953
Query 722 TACTTGCTCAAAGTGCAGTCCGTGTGATCGCTAATGATACACCAGAAGAATTGGCTAAAA 781
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 954 TACTTGCTCAAAGTGCAGTCCGTGTGATTGCTAATGATACACCAGAAGAATTGGCCAAAA 1013
Query 782 GGGTTCTTCATGAGGAACACAAGCTGTATGTCGAGGTGGTGGCTGCGATTTGCGAAGAGC 841
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1014 GGGTTCTTCATGAGGAACACAAACTGTATGTCGAGGTGGTGGGTGCGATTTGCGAAGAGC 1073
Query 842 GGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAGCAAAGAAAACCCTGACGAGT 901
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1074 GGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAACAAACAAAACCCTGACGAGT 1133
Query 902 ACTATTAGAT-CATCTACAAATGAAGTTA--CATT---T-T---------CA-A-----A 939
|||||||||| | || ||||||||||||| |||| | | || | |
Sbjct 1134 ACTATTAGATTC-TCAACAAATGAAGTTATTCATTGGATGTTAGATTAGTCACATTTTCA 1192
Query 940 A--CAAAGTGTTTCAACCTAGGTTATATAGAAGAAGTTTTTT-GCC-GAAAGTATAGATT 995
| |||||||||||||| |||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 1193 AAACAAAGTGTTTCAACATAGGTTATGTAGAAGAAGTTTTTTTGCCCGAA-GTATAGATT 1251
Query 996 GAGAAATGTTTCTGATGCTAAATTTTGTTTCGGTTGGGTCAAAATCATATGAAATGAGAT 1055
|||| ||||||||||| |||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1252 GAGACATGTTTCTGATACTAAATTTTGTTTCGGTTGGGTCAGAATCATATGGAAGGAGAT 1311
Query 1056 GAA-TTCGAGCCAGGAGACAGGATTTCAATGCTTGTGTTG-ATA-T-C-AACAGCCTTTA 1110
||| |||||| |||||||||| |||| ||||||||||||| ||| | | ||||| |||||
Sbjct 1312 GAAATTCGAGTCAGGAGACAGCATTTTAATGCTTGTGTTGTATAATACCAACAGTCTTTA 1371
Query 1111 TTCAATTTTTTCCTAGAGTGTTTTATTACCTTGACGTTTGGT 1152
||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1372 TTCAATTTTTTCCTAGAATGTTTTATTACCTTGAAGTTTGGT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5