BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473615

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31170.4 | Symbols: SRX | sulfiredoxin | chr1:11133410-11134...   628    1e-179


> AT1G31170.4 | Symbols: SRX | sulfiredoxin | chr1:11133410-11134844 
FORWARD LENGTH=866
Length=866

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 364/376 (97%), Gaps = 0/376 (0%)
 Strand=Plus/Plus

Query  1    AGGAGACGGCGACAATGGCGAATTTGATGATGAGATTACCAATTAGCTTAAGAAGCTTCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  98   AGGAGACGGCGACAATGGCGAATTTGATGATGAGATTACCAATTAGCTTGAGAAGCTTCT  157

Query  61   CTGTTTCAGCTTCTTCATCTAACGGTTCCCCGCCGGTGATCGGAGGATCTAGCGGCGGTG  120
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  158  CTGTTTCAGCTTCTTCATCCAACGGTTCGCCGCCGGTGATCGGAGGATCTAGCGGCGGTG  217

Query  121  TAGGACCGATAATAGTGGAATTACCGTTGGATAAGATACGAAGACCGTTGATGCGAACCA  180
            |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  218  TAGGACCGATGATTGTGGAATTACCGTTGGAGAAGATACGAAGACCGTTGATGCGAACCA  277

Query  181  GATCCAATGATCAGAACAAAGTGAAGGAGCTTATGGATAGTATCCGTCAAATCGGTCTTC  240
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  278  GATCCAACGATCAGAACAAAGTGAAAGAGCTTATGGATAGTATCCGTCAAATCGGTCTTC  337

Query  241  AAGTTCCGATTGATGTGATTGAAGTTGATGGAACTTACTATGGGTTCTCGGGTTGTCACC  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  338  AAGTTCCGATTGATGTGATTGAAGTTGATGGAACTTACTATGGGTTCTCGGGATGTCACA  397

Query  301  GGTACGAGGCGCATCAGAAGCTAGGGCTTCCAACTATACGTTGCAAAATTCGTAAAGGAA  360
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  398  GATACGAGGCGCATCAGAAGCTAGGGCTTCCAACTATACGTTGCAAAATCCGTAAAGGAA  457

Query  361  CAAAGGAAACATTAAG  376
            ||||||||||||||||
Sbjct  458  CAAAGGAAACATTAAG  473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5