BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473619
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1866 0.0
> AT1G31600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:11312961-11316473 REVERSE LENGTH=2223
Length=2223
Score = 1866 bits (1010), Expect = 0.0
Identities = 1183/1266 (93%), Gaps = 13/1266 (1%)
Strand=Plus/Plus
Query 1 GATACCTCGCCGTTATACAATCGGAGAAAGTTACAATCTCTTATTCCGAGAATGGTTCAG 60
|||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 717 GATACCTCGCCGTTATACGATCGGAGAAAGTTACAGTCTTTTATTCCGAGAATGGTTCAG 776
Query 61 CCGCGATTCGTCCGTCCGACGCAATCATCCCCTTCCTCCAATTCCGGAGAATCAAATTCA 120
||||||||||||||||||||||||||||| || || |||| ||| |||||| ||||||||
Sbjct 777 CCGCGATTCGTCCGTCCGACGCAATCATCGCCATCTTCCATTTCTGGAGAACCAAATTCA 836
Query 121 TCCAATCTATACGTCGCCAATTGTGGACCGGCGGTTGGACTATCACACGACGCAATCGCG 180
|| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 837 TCAAATCTATACGTCGCGAATTGTGGACCGGCGGTTGGACTAACACACAACGCAATCGCG 896
Query 181 GCGGTGTTCGCTGCA-TACGGTAAAGTAAACGGCGTCTACGCGGCTGACGATAGCGGCGT 239
||||||||||||| | | |||| |||||||||| ||||||||||| || |||||||||||
Sbjct 897 GCGGTGTTCGCTG-AGTTCGGTGAAGTAAACGGAGTCTACGCGGCGGATGATAGCGGCGT 955
Query 240 TCGTATTATTATCTCTTTCGCAGAT-CCTTGTTCGGCGAAATCAGCTTTAGAAGCTTTGA 298
|||| |||| |||||||||| ||| |||| || |||||| ||||| ||||||||||||
Sbjct 956 TCGTGTTATCGTCTCTTTCGCTGATCCCTT-CTCCGCGAAAGCAGCTCTAGAAGCTTTGA 1014
Query 299 ATGGTCGACCATGTCCTGACCTTAAAGGACGGTCTTTGCATATTCGATATTCAGTTCTTC 358
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1015 GTGGTCGACCATGTCCTGACCTTAAAGGACGTTCTTTGCATATTCGATATTCAGTTCTTC 1074
Query 359 AATTACCTT-C----CG-AGGTGAATGATTGTGTTCCAGTGTCTTTGGTTGATTCAGAGT 412
||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 AATTACCTTCCGAGACGCAGGTGAATGATTGTGTTCCAGTGTCTTTGATTGATTCAGAGT 1134
Query 413 TGAATATCCCAGGGCTTTTCTTGTTACCTGATTTTGTTAGTGTGGAAGAAGAACAGCAAT 472
||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 1135 TGAATATTCCAGGGCTTTTCTTGTTACCTGATTTTGTCACTGTGGCAGAAGAACAGCAAT 1194
Query 473 TGCTTGCAGCTGTTGATGCTCGGCCTTGGATTGGTCTTGCTAAACGGCGTGTTCAACACT 532
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1195 TGCTTGCAGCTGTTGATGCTCGACATTGGATTGGTCTTGCTAAACGGCGTGTTCAACACT 1254
Query 533 ATGGATATGAGTTTTGTTACGGGACAAGAAATGTTGATACCAAGAAGCGTCTTGGCGAGC 592
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1255 ATGGATATGAGTTTTGTTACGGGACAAGAAATGTTGATACCAAAAAGCGTCTCGGTGAGC 1314
Query 593 TTCCGTCGTTTGTTTCTCCTATACTTGAAAGAATGTCGTTGTTCCCGAACTTCGACATTA 652
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 1315 TTCCGTCGTTTGTTTCTCCTATACTTGAAAGAATCTATTTGTTCCCGAACTTTGACAACG 1374
Query 653 ACTCAGCAAGCTTGGATTTGGACCAGTTAACGGTAAATGAATACCCATCTGGTGTGGGTT 712
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1375 GCTCAGCAAGCTTGAATTTGGACCAGTTAACGGTAAATGAGTACCCATCTGGTGTGGGAT 1434
Query 713 TATCGCCTCACATTGACACACATTCAGCATTTGAAGATTGCATCTTCAGCCTTTCTTTAG 772
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1435 TATCGCCTCATATTGATACACATTCAGCATTTGAAGATTGCATATTCAGCCTTTCTTTAG 1494
Query 773 CTGGTCCTTGTATTATGGAATTCAGAAGATACTCTGTTTCCACATGGAAAGCCTCATCTG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1495 CTGGTCCTTGTATTATGGAATTCAGAAGATACTCTGTTTCCACATGGAAAGCCTCAACTA 1554
Query 833 CCGATGCTGAGAAGTCGGGTGACTCCTCTTGCATCAGAAAGGCCTTATATCTTCCTCCTC 892
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1555 CCGATGCTGAGAAGTCGGGTGACTCCTCTTGCATCAAAAAGGCCTTATATCTTCCTCCTC 1614
Query 893 GGTCCATGCTCTTATTATCCGGTGAAGCACGCTATGCTTGGAATCACTACATTCCACATC 952
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 GGTCTATGCTCTTATTATCCGGTGAAGCACGATATGCTTGGAATCACTACATTCCACATC 1674
Query 953 ACAAGATTGGCAAGGTGAAGGAGAAAGTGATCAGAAGAAGTTCCAGAAGGGTATCTTTCA 1012
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1675 ACAAGATTGACAAGGTGAAGGATAAAGTGATCAGAAGAAGTTCTAGAAGGGTATCTTTCA 1734
Query 1013 CATTACGGAAGGTGAGAAATCTTCCTTGCAAGT-GTAAGTATCCACAATACTGTGACTCT 1071
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1735 CATTACGGAAGGTGAGAAATCATCCTTGCA-GTTGTAAGTATCCACAATACTGTGACTCT 1793
Query 1072 CAGCAACAAATGTAACTGAAGAAGAGGAGAAAAATGAAATAAAGAATATTTT-AGGTAGA 1130
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 1794 CAGCAACAAATGTAACTGAAGAAGAGGAGAAAAATGAAATGAATAATATTTTTAGGTATA 1853
Query 1131 GACAAAATGCATATGGAGAAGAAAAAGAAGAACCATTTTTGTAGCTGTTTACTCTTAATT 1190
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1854 GACAAAATGCATATGGAGAAGAAAAAGAAGAGCCATTTTTGTAGCTGTTTACTCTTAATT 1913
Query 1191 ATTAAACTAGATTTTGATGATAAACATTGTTACATTTGCATTGCAACATAGAAAGAAAGA 1250
||| |||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1914 ATTTAACTAGATTTGGATGATAAACATTGTTACAGTTGTATTGCATCATAGAAAGAAAGA 1973
Query 1251 TCATCG 1256
||||||
Sbjct 1974 TCATCG 1979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5