BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473620

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07505.1 | Symbols:  | zinc ion binding | chr2:3125671-31261...   573    4e-163


> AT2G07505.1 | Symbols:  | zinc ion binding | chr2:3125671-3126173 
FORWARD LENGTH=432
Length=432

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 388/427 (91%), Gaps = 0/427 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTGATAAAGGAAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTAGTTTTG  60
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGGTGATAGAGGGAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTGGTTTTG  60

Query  61   AGGACATCAAAGACTATTAAAAATCCAGGGAGGCTCTTTTATGCTTGTCGATATGGAGAG  120
            ||||||||||| ||| | ||||||||| |||| ||||||||||||||||||| |||||||
Sbjct  61   AGGACATCAAAAACTGTGAAAAATCCAAGGAGACTCTTTTATGCTTGTCGATGTGGAGAG  120

Query  121  GAGAATGGTCGTGGTCACTTGTTTAAGTGGACAGATGAAACAATGGTTGAAGAGATGGAA  180
            ||||||||| ||||||||||||||| || ||||||||||  |||||| ||||||||||||
Sbjct  121  GAGAATGGTAGTGGTCACTTGTTTAGGTTGACAGATGAAGTAATGGTGGAAGAGATGGAA  180

Query  181  GACATAATTCCAAAGATTGATGAACTTGAAAGAGCTTCCTTGACATTACAAAAAGGTTTA  240
            |||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||| |||
Sbjct  181  GACATACTTCCAAAGATTGATGAACTTGAAGGGGCTTCATTGACCTTACAAAAAGGGTTA  240

Query  241  CAAGCTTTAGAATCTGAGATGGAAACTCTTGCAATGGAGACTCGTTCATGTGAAGCTGTT  300
            ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| 
Sbjct  241  CAAGCTTTAGAATTTGAGATGGAAACTCTGGCAATGGAGACTCGTACATGTGAAGCTGTG  300

Query  301  GTATGCGGTTTTGAGAAGGAGCTGCGGGGTTTAGAGAAGGAGATTCAAGGCTGCAAGATG  360
            || ||||| | ||||||||||||||  ||||||||||||||||||||||| |||||||| 
Sbjct  301  GTTTGCGGCTATGAGAAGGAGCTGCTAGGTTTAGAGAAGGAGATTCAAGGTTGCAAGATT  360

Query  361  GAATTGCGTGGTTTGAAGAACATTCTTGTGTGTGTAGTGTTGATGGTTCTTGTTTATGTG  420
            ||||||||||| |||||||| ||||||||||||  ||||||||||  |||||| ||||||
Sbjct  361  GAATTGCGTGGGTTGAAGAAGATTCTTGTGTGTAAAGTGTTGATGACTCTTGTCTATGTG  420

Query  421  TTTGTGT  427
            |||||||
Sbjct  421  TTTGTGT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5