BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473621

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31580.1 | Symbols: ECS1, CXC750 | ECS1 | chr1:11311169-1131...   291    7e-78


> AT1G31580.1 | Symbols: ECS1, CXC750 | ECS1 | chr1:11311169-11311989 
FORWARD LENGTH=696
Length=696

 Score =  291 bits (157),  Expect = 7e-78
 Identities = 229/260 (88%), Gaps = 19/260 (7%)
 Strand=Plus/Plus

Query  1    AACCTTTCTTCTCTTATCTCTCCAAGATTTTATTCTTATTCTCTACCATATATCCTCACC  60
            ||||| |||| ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct  1    AACCTCTCTTTTCTTATCTCTCAAATATTTTATTCTTATTCTCTACCATATATCTTCACC  60

Query  61   TCTCTATTCTATATAAATGCATAAACTTGAGTCACACTGATAAGTAAATTAAGAAA----  116
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
Sbjct  61   TCTCTATTCTATATAAATGCATAAACTTGAGTCACGCTGATAAGTAAATTAAGAAAGGAA  120

Query  117  T---------G--GG-ATATTCGAT---CTCTTCCATGTTTCTCTTTCTCCTTCTTCTTT  161
            |         |  || || ||| ||   ||||||||||||||||||||||||||||||| 
Sbjct  121  TATTCATTAAGATGGCATCTTCTATAGTCTCTTCCATGTTTCTCTTTCTCCTTCTTCTTC  180

Query  162  TTGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGAAG  221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  TTGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGGAG  240

Query  222  AGATAAATCATGCTGACCCA  241
            |||||||| ||||||| |||
Sbjct  241  AGATAAATTATGCTGATCCA  260


 Score =  285 bits (154),  Expect = 3e-76
 Identities = 216/243 (89%), Gaps = 16/243 (7%)
 Strand=Plus/Plus

Query  359  AGAAGGTGCCCTTTCTGTAAGCCTCCTCCTCCCCCAAAGGCTTTCCCAAGCAACACACCT  418
            |||||||||||||||||| | ||||||||||||||||||||||||||||  ||| |||| 
Sbjct  351  AGAAGGTGCCCTTTCTGTTATCCTCCTCCTCCCCCAAAGGCTTTCCCAAAAAACTCACCA  410

Query  419  AGTCACTGATCTCACTATAGCTACGAATATTAATGCGTCAATAAATGTATGCACGTTAAT  478
            |||||||||| |||||||||||||||| | |  |||||||||||||||||||||||||||
Sbjct  411  AGTCACTGATGTCACTATAGCTACGAA-A-T--TGCGTCAATAAATGTATGCACGTTAAT  466

Query  479  CTGTTTCATTTGTGATGTG-GGTGGCTATTTATCTATTATATGCATAATGCATGTGTTTG  537
             |||||||||||||||||| || |||| ||||||||||||||||||  | || |||||||
Sbjct  467  TTGTTTCATTTGTGATGTGTGG-GGCTCTTTATCTATTATATGCATG-T-CACGTGTTTG  523

Query  538  TCATATTTGC---G-AT---GTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCAT  590
            ||||||||||   | ||   ||||||||||||||||||||||||||||||||||||||| 
Sbjct  524  TCATATTTGCAATGTATCATGTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCA-  582

Query  591  ATT  593
            |||
Sbjct  583  ATT  585



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040019906


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5