BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473625
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31500.4 | Symbols: | DNAse I-like superfamily protein | ch... 2152 0.0
> AT1G31500.4 | Symbols: | DNAse I-like superfamily protein |
chr1:11273605-11276572 REVERSE LENGTH=1508
Length=1508
Score = 2152 bits (1165), Expect = 0.0
Identities = 1366/1460 (94%), Gaps = 25/1460 (2%)
Strand=Plus/Plus
Query 1 AAAGCCAAATTGGGTTAAGTCAATTGCTCTCAC--T-GATGTTTAGTACT-CTGC-AT-C 54
|||||||||||||||||||||||||| | |||| | |||||||||| || | | | |
Sbjct 1 AAAGCCAAATTGGGTTAAGTCAATTGTTGTCACTATAGATGTTTAGTTCTACAACTCTGC 60
Query 55 ATCATCTTCCTCGTCCGAA---TCTTCTTCCCAGGAAAATTATTTCGAAAAGAATGAGTA 111
||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 61 ATCATCTTCCTCGTCCGAATCTTCTTCTTCCCAGGAAAGTTATTTCGAGAAGAATGAGTA 120
Query 112 CGAATCCTGCAATTGAACCAAAAGTTCGAAAATTCGAATCTGTTGAAGGAGCTGATATTG 171
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 121 CGAATCCTGCAATTGAACCAAAAGTTCGCAAATTTGAATCTGTTGAAGGAGTTGATATTG 180
Query 172 GTTCAAGAAGTATATCTGATGGTTTGTTTGCTAATTTCTATTTACTTATCAAAGCTTGTG 231
||||||||| || ||| |||||||| |||||| ||| || ||||||||||||||||||||
Sbjct 181 GTTCAAGAAATAAATCCGATGGTTTTTTTGCT-ATTCCTCTTTACTTATCAAAGCTTGTG 239
Query 232 GCTATATA-AATTTTCTAGGTTTAAGTAGAATGGTAATGAGGATTTTGTGTAGTAATGAG 290
||| |||| || | | || |||||||||||| | | || | ||||||||||
Sbjct 240 GCTTTATATAACTGTATAAGTTTAAGTAGAA---T--T--GG----T-ACTAGTAATGAG 287
Query 291 AATTTTGTGTTTCCAGGTATCAAATTCCGTCTCGTTTCGTATAACATATTAGCTCAGGTT 350
|||||||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 288 AATTTTGTGTTTTCAGGTATCAGATTCCGTCTTGTTTCATATAACATATTAGCTCAGGTT 347
Query 351 TATGTGAAGAGTGCACTTCTCCCACACTCTCCACCTGCCTGTCTCAAATGGAAAGCTCGT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TATGTGAAGAGTGCACTTCTCCCACACTCTCCACCTGCCTGTCTCAAATGGAAAGCTCGT 407
Query 411 TCACATGCAATTCTAAGCGTTCTCAAAAATCTCAAGGCTGATTTCTTTTGTCTGCAGGAA 470
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 408 TCACATGCAATTCTCAGCGTTCTCAAAAATCTCCAGGCTGATTTCTTTTGTCTGCAGGAA 467
Query 471 GTAGATGAGTACGATAGCTTTTACAGAAATAACATGGAGTCTCTGGGCTATTCTGGGATT 530
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 468 GTAGATGAGTACGATAGCTTTTACAGAAATAACATGGACTCTCTGGGATATTCTGGGATT 527
Query 531 TATATTCAGAGAACCGGACAGAGGAAGCGTGATGGTTGTGCAATCTTCTACAAGCCAAGC 590
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TATATTCAGAGAACCGGCCAGAGGAAGCGTGATGGTTGTGCAATCTTCTACAAGCCAAGC 587
Query 591 TGTGCAGAGTTGGTCACAAAGGAACGGATCGAATATAATGATCTTGTGGACTCAATAAAG 650
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TGTGCAGAGTTAGTCACAAAGGAACGGATCGAATATAATGATCTTGTGGACTCAATAAAA 647
Query 651 GCAGATAGTGTTTCCTGCAGCGAACAGAAGATTGAGACATCCAACGAAGGAAAAGATTCT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GCAGATAGTGTTTCCTGCAGCGAACAGAAGATTGAGACATCCAACGAAGGAAAAGATTCT 707
Query 711 CGAAAAGATAGTCGTGACCTTAATGATCCACTTGTGAGACTAAAACGCGATTGCGTTGGA 770
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 708 CGAAAAGACAGTCGTGACCTTAATGATCCACTAGTGAGACTAAAACGTGATTGCGTTGGA 767
Query 771 ATAATTGCTGCTTTTAGAATCAACAAGCCGTTTCATCACATTGTTATCGTGGCAAACACA 830
||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 768 ATAATGGCTGCTTTTAGGATCAACAAGCCGTTTCAGCATATCGTTATCGTGGCAAACACA 827
Query 831 CATCTTTACTGGGACCCGGAATTGGCTGATGTCAAGCTTGCTCAAGCCAAGTACCTACTA 890
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 CATCTTTACTGGGACCCTGAATTGGCTGATGTCAAGCTTGCTCAAGCCAAGTATCTACTG 887
Query 891 TCACGACTAGCTCAGTTCAAAACGCTAATATCGGATGAATTCGAATGCACACCATCATTG 950
||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||
Sbjct 888 TCACGACTAGCTCAGTTCAAAACACTAATATCAGATGAATTTGAGTGCACACCTTCATTG 947
Query 951 CTTCTAGCTGGCGACTTCAATTCAATTCCTGGGGATATGGTTTATAATTACCTAGTATCG 1010
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 948 CTACTAGCTGGCGACTTCAATTCAATTCCTGGGGATATGGTTTATAGTTACCTAGTATCG 1007
Query 1011 GGTAATGCTAAACCCGCAGAGACCACAGAAGAAGAAGAAGCTCCAGTTCCGCTGTCTAGT 1070
||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1008 GGTAATGCTAAACCCACAGAGACCATAGAAGAAGAAGAAGCTCCAGTTCCTCTGTCTAGT 1067
Query 1071 GTCTATGAAGTCACAAGAGGAGAGCCTAAATTCACAAATTGCACTCCTGGCTTCACAAAC 1130
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1068 GTCTATGAAGTCACAAGAGGAGAGCCTAAGTTCACAAATTGCACTCCTGGCTTCACAAAC 1127
Query 1131 ACACTTGACTACATCTTCATCTCTCCTTCAGACTTCATCAAACCTGTGAGTATCCTCCAA 1190
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1128 ACACTTGACTACATCTTCATCTCTCCTTCAGACTTCATTAAACCTGTGAGTATCCTTCAA 1187
Query 1191 CTACCTGAGCCGGATTCTCCAGATGTTGTCGGTTTCTTACCGAATCATCATCACCCGAGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CTACCTGAGCCGGATTCTCCAGATGTTGTCGGTTTCTTACCGAATCATCATCACCCGAGT 1247
Query 1251 GATCATTTACCGATAGGAGCTGAGTTTGAGATTCGTCGGGAATAGAAAGTTTTGTTTTTT 1310
||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1248 GATCATTTACCTATAGGAGCTGAGTTTGAGATTCGTCGGGAATAGGAAGTTTCGTTCTTT 1307
Query 1311 AGAAAGTTTTGTTGCATAACTCCATTGTTTTAGTATTTGAATATGGTTCTTGTAGCAAAT 1370
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1308 AGAAAGTTTTGTCGCATAACTCCATTGTTTCAGCATTTGAATATGGTTCTTGTAG-AAAT 1366
Query 1371 CGTGAAGCAGTGAATCATACACACACAACACAAAGTATTAAAGGACTTGGGATCATTTTA 1430
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1367 CATGAAGCAGTGAATCATACACACACAACACAAAGTATTAAAGGACTTGG-ATCATTTTT 1425
Query 1431 GTCTCAGTAAACTCGAAATT 1450
|||||| |||||||||||||
Sbjct 1426 GTCTCAATAAACTCGAAATT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5