BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473629
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31470.1 | Symbols: NFD4 | Major facilitator superfamily pro... 2712 0.0
AT1G31460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 699 0.0
> AT1G31470.1 | Symbols: NFD4 | Major facilitator superfamily protein
| chr1:11262918-11264963 REVERSE LENGTH=1787
Length=1787
Score = 2712 bits (1468), Expect = 0.0
Identities = 1681/1785 (94%), Gaps = 9/1785 (1%)
Strand=Plus/Plus
Query 1 ATCATCTTCCTTTGTATATGAGACCTCGTATCAGAGATGCATCTGAAAAACTCCGACCTA 60
||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 3 ATCATCTTCCTTTGTATATGAGACCTCGTATCAGAGATGTTTCAGATAAACTCCGACCTA 62
Query 61 ATCGAGCCTCCTTCGACGAC---GAAGGAAAGTTTCACCGGAAACA-CATTCCGCCTCTC 116
| |||||||||||||||||| ||| |||||||||||||||||| | |||||||||||
Sbjct 63 ACCGAGCCTCCTTCGACGACGGAGAAACAAAGTTTCACCGGAAACATC-TTCCGCCTCTC 121
Query 117 AGGACCATGTTCGGTCGATGGCGGAAATGGACTGTTCTTGTGGCAGCGATCTGGATCCAA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGGACCATGTTCGGTCGATGGCGGAAATGGACTGTTCTTGTGGCAGCGATCTGGATCCAA 181
Query 177 GCATCCACGGGAACCAACTTCGATTTCTCTGCTTACTCTTCCCATCTCAAATCAGTACTC 236
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 182 GCATCGACGGGAACCAACTTCGATTTCTCAGCTTACTCTTCCCATCTCAAATCAGTTCTC 241
Query 237 GGAATATCTCAGGTGAGGTTGAATTACCTCGCGGTGGCTTCTGATTTGGGGAAAGCGTTT 296
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 242 GGAATTTCTCAGGTGAGGTTAAATTACCTCGCCGTGGCTTCTGATTTGGGGAAAGCGTTT 301
Query 297 GGATGGTCTTCGGGGATTGCTTTAGGTTATTTCCCTCTCTCCGTCGTTCTTTTCGCTGCG 356
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGATGGTCGTCTGGGATTGCTTTAGGTTATTTCCCTCTCTCCGTCGTTCTTTTCGCTGCG 361
Query 357 GCGGCTATGGGATTTGTTGGTTATGGTGTTCAGTGGCTAGTCATCACCAACATCATCACT 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 GCGGCTATGGGATTTGTTGGTTACGGTGTTCAGTGGCTAGTCATCACCAACATCATCACT 421
Query 417 TTGCATTATTCTCTGGTGTTTCTGTGTTGCTTGTTGGCTGGATTAAGCATCTGTTGGTTC 476
|||| |||||||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 422 TTGCCTTATTCTCTGGTGTTTCTCTGCTGCTTGTTAGCTGGATTAAGTATCTGTTGGTTC 481
Query 477 AACACAGCATGTTTTATCCTCTGCATTCGTCATTTCCCGAACAATCGTGCTCTCGCCTTA 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AACACAGCATGTTTCATCCTCTGCATTCGTCATTTCCCGAACAATCGTGCTCTCGCCTTA 541
Query 537 TCTTTAACGGTAAGCTTCAATGGAATTAGTGCAGCATTGTACTCCCTTGCTTTCAATGCA 596
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 TCTTTAACGGTAAGCTTCAATGGAATCAGTGCAGCATTGTACTCCCTTGCTTTCAATGCA 601
Query 597 ATTAACCCGTCGTCTTCGAATCTATACCTTCTGCTGAACTCTCTGGTTCCCCTTGTTGTC 656
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 602 ATTAACCCGTCGTCGTCCAATCTATACCTTCTGCTGAACTCTCTGGTTCCCCTTGTTGTT 661
Query 657 TCGTTTGCTGCTCTTTATCCAGTTCTTACTAAACCTTCTATAGATCCTACACCAGACAAT 716
|| |||||||||||||| ||||||||||||||||| ||| ||||| |||| || ||| ||
Sbjct 662 TCCTTTGCTGCTCTTTACCCAGTTCTTACTAAACCGTCTCTAGATACTACTCCGGACTAT 721
Query 717 GAATCCCGGC-GAAATGACTCCCATGTGTTTACCATTTTGAATGTCTTAGCCGTTACGAC 775
|| |||| || || ||||||||||||||||||||||||||||||| ||||| || | ||
Sbjct 722 GATTCCC-GCAGACATGACTCCCATGTGTTTACCATTTTGAATGTTTTAGCTGTCATTAC 780
Query 776 AAGTTTTCACCTTCTTCTATCCAGTTCCAGTACTTCATCAGCTCGTTTGAATTTCATTGG 835
||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 781 GAGTTTCCACCTTCTCCTATCTAGTTCCAGTACTTCATCAGCGCGTTTGAATTTCATTGG 840
Query 836 AGCTATCGTCCTTCTGGTTTTCCCCTTGTGTGCTCCTCTTCTCGTCTATGCTCGAGATTA 895
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 841 AGCTGTCGTCCTTCTGGTTTTCCCCTTGTGTGCTCCTCTTCTCGTTTATGCTCGGGATTA 900
Query 896 CTTTCTTCCTGTTATTAATGCTCGTTTAAACCATGAAAGCTCTGGCTATGTTATGCTTAA 955
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTTCTTCCGGTCATTAACGCTCGTTTAAACCATGAAAGCTCTGGCTATGTTATGCTTAA 960
Query 956 CATAGATGAGCTCAAGAGCCAAAAAGCGTCTGTTTCCAGCAAAATTGGGTATGAACAAT- 1014
||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| ||
Sbjct 961 CATAGATGAGCTCAAGAACCAAAAAACGTCCGTTTCCAGCAAAACCGGGTATGAAC-ATA 1019
Query 1015 TGGGGACTGCTAAGGAAGGGAACATAGTGATGCTCGGTGATGAACACTCCTTTCAATTGC 1074
|||||||||||||||||||||||| ||||| ||||||||||||||| || |||| |||||
Sbjct 1020 TGGGGACTGCTAAGGAAGGGAACACAGTGAGGCTCGGTGATGAACATTCGTTTCGATTGC 1079
Query 1075 TCATAAGTAGATTGGAATTTTGGTTATACTACATTGCGTATTTCTGTGGTGGCACTATTG 1134
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 TCATAAGTAGATTGGAGTTTTGGTTATACTACATTGCGTATTTCTGTGGTGGCACAATTG 1139
Query 1135 GCCTTGTGTATAGCAACAATTTGGGACAGATTGCTCAGTCTTTAGGACAAAACTCTACAA 1194
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1140 GCCTTGTTTACAGCAACAATTTGGGACAGATTGCTCAGTCTTTGGGACAAAACTCTACTA 1199
Query 1195 CCCTCGTCACAATCTACTCTTCATTCTCCTTCTTCGGTCGATTGCTCTCTGCCGCACCAG 1254
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 CACTAGTCACAATCTACTCTTCATTCTCCTTCTTCGGTAGATTGCTCTCTGCCGCACCAG 1259
Query 1255 ATTTTATGCACAAGAGATTTCGTTTGACAAGAACCGGCTGGTTTGCAATTGCACTCTTAC 1314
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1260 ATTTTATGCACAAGAGATTTCGTTTAACAAGAACCGGCTGGTTTGCAATCGCACTCTTAC 1319
Query 1315 CAACTCCAATCGCTTTCTTTTTACTAGCGATATCATCCTCACAACAAATAGCATTGCAAA 1374
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 1320 CAACTCCAATCGCTTTCTTTTTACTAGCGGTATCATCCTCACAACAAACAGCATTGCAGA 1379
Query 1375 CGGCAACCGCCTTAATCGGTCTGAGCTCAGGTTTCATATTTGCAGCTGCAGTCTCCATAA 1434
| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1380 CCGCAACCGCATTAATCGGTCTGAGTTCAGGTTTCATATTCGCAGCCGCAGTCTCCATAA 1439
Query 1435 CATCTGATCTCTTTGGACCCAATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CATCTGATCTCTTTGGACCCAATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACA 1499
Query 1495 TACCAATCGGCTCACTCTTATACGGTTACATCGCTGCCTCTATTTACGAAGCCAACGCAA 1554
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1500 TACCAATCGGCTCACTCTTATACGGTTACATCGCTGCCTCCATTTACGAAGCCAACGCAA 1559
Query 1555 TCCCCGAGATAACACCAATCGTGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACT 1614
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCCCCGATATAACACCAATAGTGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACT 1619
Query 1615 TCAAAACGTTTGTGTTTTGGGGTTTCTTATCAATCGTCGGCGTCATCTCAAGTCTGTTAC 1674
|||||||||||||||||||||||| ||| || ||| |||||||| |||||||||||| ||
Sbjct 1620 TCAAAACGTTTGTGTTTTGGGGTTGCTTGTCTATCCTCGGCGTCGTCTCAAGTCTGTCAC 1679
Query 1675 TGTACATAAGAACCAAACCGGTTTATCACCGGCTTGAACAAGACCAGGTTTCATTAACCT 1734
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1680 TGTACATACGAACCAAACCGGTTTATCACCGGCTTGAACAAGACAAGGTTTCATTAACAT 1739
Query 1735 CATCGTACAAGGATCTTGATCCATTGTAAATCAAATTTGTAACAC 1779
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 CATCGTACAAGGATCTTGATCCATTGTAAATCAAATCTGTAACAC 1784
> AT1G31460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G23270.1);
Has 1251 Blast hits to 756 proteins in 185 species: Archae
- 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants
- 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink).
| chr1:11261541-11263364 REVERSE LENGTH=1824
Length=1824
Score = 699 bits (378), Expect = 0.0
Identities = 422/444 (95%), Gaps = 0/444 (0%)
Strand=Plus/Plus
Query 1336 TACTAGCGATATCATCCTCACAACAAATAGCATTGCAAACGGCAACCGCCTTAATCGGTC 1395
|||||||| |||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct 1 TACTAGCGGTATCATCCTCACAACAAACAGCATTGCAGACCGCAACCGCATTAATCGGTC 60
Query 1396 TGAGCTCAGGTTTCATATTTGCAGCTGCAGTCTCCATAACATCTGATCTCTTTGGACCCA 1455
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TGAGTTCAGGTTTCATATTCGCAGCCGCAGTCTCCATAACATCTGATCTCTTTGGACCCA 120
Query 1456 ATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACATACCAATCGGCTCACTCTTAT 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACATACCAATCGGCTCACTCTTAT 180
Query 1516 ACGGTTACATCGCTGCCTCTATTTACGAAGCCAACGCAATCCCCGAGATAACACCAATCG 1575
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
Sbjct 181 ACGGTTACATCGCTGCCTCCATTTACGAAGCCAACGCAAGCCCCGATATAACACCAATAG 240
Query 1576 TGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACTTCAAAACGTTTGTGTTTTGGG 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACTTCAAAACGTTTGTGTTTTGGG 300
Query 1636 GTTTCTTATCAATCGTCGGCGTCATCTCAAGTCTGTTACTGTACATAAGAACCAAACCGG 1695
||| ||| || ||| |||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 301 GTTGCTTGTCTATCCTCGGCGTCGTCTCAAGTCTGTCACTGTACATACGAACCAAACCGG 360
Query 1696 TTTATCACCGGCTTGAACAAGACCAGGTTTCATTAACCTCATCGTACAAGGATCTTGATC 1755
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 361 TTTATCACCGGCTTGAACAAGACAAGGTTTCATTAACATCATCGTACAAGGATCTTGATC 420
Query 1756 CATTGTAAATCAAATTTGTAACAC 1779
||||||||||||||| ||||||||
Sbjct 421 CATTGTAAATCAAATCTGTAACAC 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5