BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473633
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2617 0.0
AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 60.2 7e-08
> AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:11253936-11255737 REVERSE LENGTH=1802
Length=1802
Score = 2617 bits (1417), Expect = 0.0
Identities = 1661/1778 (93%), Gaps = 20/1778 (1%)
Strand=Plus/Plus
Query 1 ATGAACATG-GGTTCTATACAAACTCCATCACTTCTTATGTACAATAAGATGCTCAAATC 59
||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACATGAGTTTGT-TACAAACTCCATCACTTCTTATGTACAATAAGATGCTCAAATC 59
Query 60 TCTTGCGGA-GAGTAAAAGCTTCACGAAAGTTTTGGCTTTGTTCGGTGAATTGCGAGGAC 118
|||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTTGCTGATG-GTAAAAGTTTCACGAAAGTTTTGGCTTTGTTCGGTGAATTGCGAGGAC 118
Query 119 AAGGATTGTATCCTGATAATTTCACGTTACCGGTTGTTCTGAAA-TCAATTGGACGTTTG 177
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 119 AAGGATTGTATCCTGATAATTTCACGTTACCGGTTGTTCT-AAAGTCAATTGGTCGTTTG 177
Query 178 AGGAAGGTTATAGAAGGTGAGAAGGTTCATGGTTATGCTGTGAAAACTGGGCTTGAGT-C 236
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 178 AGGAAGGTTATAGAAGGTGAGAAGGTTCATGGTTATGCTGTGAAAGCTGGGCTTGAGTTC 237
Query 237 TGATTCTTATGTATGC-AATTCACTCATGGGAATGTATGCGGCTTTGGGTAAGATGGAGA 295
||||||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 238 -GATTCTTATGTAT-CTAATTCACTCATGGGAATGTATGCTTCATTGGGTAAGATAGAGA 295
Query 296 TCACTCACAAAGTGTTCGACGAAATGCCTGAACGAGATGTTGTTTCTTGGAATGGGTTGA 355
|||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 296 TCACACATAAAGTGTTCGATGAAATGCCTCAACGAGATGTTGTTTCTTGGAATGGGTTGA 355
Query 356 TTTCTAGTTATGTTGGGCATGGGAGATTTGAGGATGCCATTAGTGTGTTTAAGCGGATGA 415
|||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 356 TTTCTAGTTATGTTGGTAATGGGAGGTTTGAGGATGCCATTGGTGTGTTTAAGCGGATGA 415
Query 416 GTCGGGAGAGCAATTTGAAGGCTGATGAGGGTACGATTGTGAGCACTCTTTCGGCTTGTT 475
||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 416 GTCAGGAGAGCAATTTGAAGTTTGATGAAGGTACAATTGTGAGCACTCTTTCGGCTTGTT 475
Query 476 CGGTTTTGAAGAATCTGGAAATTGGTGAAAGGATTTATAGGTATGTTGTCACGGAATTTG 535
||| |||||||||||| ||||||||||||||||||||||||| |||||| || |||||||
Sbjct 476 CGGCTTTGAAGAATCTTGAAATTGGTGAAAGGATTTATAGGTTTGTTGTTACAGAATTTG 535
Query 536 AAATGAGTGTTAGGATTGGGAATGCGTTGGTGGATATGTTCTGTAAGTGCGGGTGTCTCG 595
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 536 AAATGAGTGTTAGGATTGGGAATGCGTTGGTGGATATGTTCTGTAAATGTGGGTGTCTCG 595
Query 596 ATAAAGCTAGAGCGATTTTCGATTCGATGAGAGACAAGAATGTTAAGTGTTGGACTAGTA 655
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATAAGGCTAGAGCGGTTTTCGATTCGATGAGAGACAAGAATGTTAAGTGTTGGACTAGTA 655
Query 656 TGGTTTCTGGGTATGTTAGTAATGGTAGGATTGATGAGGCTAGAGAGTTGTTTGAGAGAA 715
|||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 656 TGGTTTTTGGGTATGTTAGTACTGGTAGGATTGATGAGGCTAGAGTTTTGTTTGAGAGAA 715
Query 716 GTCCTGTAAAGGATGTTGTTCTGTGGACAGCTATGATGAATGGGTATGTTCAGTTTAATA 775
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 GTCCTGTAAAGGATGTTGTTTTGTGGACAGCTATGATGAATGGGTATGTTCAGTTTAACC 775
Query 776 GGTTTGATGAGGCATTGGAACTGTTCAGGTGCATGCAAACTGCGAGAATTAGGCCAGATA 835
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 776 GGTTTGATGAGGCATTGGAACTGTTCAGGTGCATGCAAACTGCGGGAATTAGGCCGGATA 835
Query 836 ATTTCGTGCTAGTCTCTCTTTTGACAGGTTGCGCGCAAACGGGAGCTTTAGAGCAAGGGA 895
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 836 ATTTCGTGCTAGTCTCTCTCTTGACAGGTTGCGCGCAAACGGGAGCTTTAGAGCAAGGAA 895
Query 896 AGTGGATCCATGGGTACATACGTGAGAACAGAGTTACAGTAGATAAAGTAGTTGGCACTG 955
| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 896 AATGGATTCATGGGTACATAAATGAGAACAGGGTTACAGTAGATAAAGTAGTTGGTACTG 955
Query 956 CTCTTGTAGACATGTATGCAAAATGTGGATGCATTGAGACAGCTCTAGGGGTTTTTTATG 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 956 CTCTTGTAGACATGTATGCAAAATGTGGATGCATTGAGACAGCTCTAGAGGTTTTCTATG 1015
Query 1016 AAATGAAGGAGAGAGACACAGCTTCGTGGACATCACTTATATACGGTCTTGCCACGAACG 1075
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 1016 AAATAAAGGAGAGAGACACAGCTTCGTGGACATCACTTATCTACGGTCTTGCGATGAACG 1075
Query 1076 GGATGTCAGGGAGAGCGCTGGACTTGTATTACGAAATGGAAAATGTTGGTGTCAGATTAG 1135
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1076 GGATGTCAGGAAGAGCGCTGGACTTGTATTACGAAATGGAAAATGTTGGTGTTAGACTAG 1135
Query 1136 ATGATATAACCTTTGTTGCGGTTTTAACAGCTTGTAATCATGGTGGATTTGTAGCAGAAG 1195
| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1136 ACGCTATAACATTTGTCGCGGTTTTAACAGCTTGCAATCATGGTGGATTTGTAGCAGAAG 1195
Query 1196 GACG-AAGAATTTTCTATTCGATGACCGAAAGACATAA-GATCCAGCCTAAATCAGAGCA 1253
| || |||| ||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1196 GCCGTAAGA-TTTTCCATTCGATGACCGAAAGACATAACG-TCCAGCCTAAATCAGAGCA 1253
Query 1254 CTACAGCTGTCTGATTGACCTACTATGCAGAGCTGGATTGTTAGATGAAGCAGAGGAATT 1313
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1254 CTGCAGCTGTCTGATTGACCTACTATGCAGAGCTGGTTTGTTAGATGAAGCAGAGGAATT 1313
Query 1314 GATAGATAAGATGCATGGTGAAAGAGACAAAACTTTAGTTCCCGTATACTGTTCTTTGCT 1373
|||||||||||||| ||||||||| || ||||| ||||||| |||||||||||||| ||
Sbjct 1314 GATAGATAAGATGCGTGGTGAAAGCGATGAAACTCTAGTTCCTGTATACTGTTCTTTACT 1373
Query 1374 TAGCGCTGCTCGGAACTATGGGAATGTAAAAATAGCTGAACGGGTAGCGGAAAAGCTCGA 1433
||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1374 TAGTGCTGCTAGGAACTATGGGAATGTAAAAATAGCAGAACGGGTAGCGGAAAAGCTTGA 1433
Query 1434 GAAAGTGGAAGTAAGTGATTCCAGTGCTCATACCCTACTTGCAAGTGTATATGCATCTGC 1493
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1434 GAAAGTGGAAGTAAGTGATTCCAGTGCTCATACTCTGCTTGCAAGTGTATATGCATCTGC 1493
Query 1494 TAATAGATGGGAAGATGTAACGAATGTGAGAAGGAAAATGAAAGATTTGGGAATCAGAAA 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TAATAGATGGGAAGATGTAACTAATGTGAGAAGGAAAATGAAAGATTTGGGAATCAGAAA 1553
Query 1554 GTTTCCAGGTTGCAGCTCCATCGAGGTTGACGGCGTTTCTCATGAATTTATTGTTGGAAA 1613
|||||| |||||||||||||||||| |||| || ||| |||||| |||||||||||| |
Sbjct 1554 GTTTCCTGGTTGCAGCTCCATCGAGATTGATGGGGTTGGTCATGAGTTTATTGTTGGAGA 1613
Query 1614 TGATCCATCATCACACCCAAAAATGGATGAGATCAACTCAATGCTGCATCAAACTACACA 1673
||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1614 TGATCTATTATCACACCCAAAAATGGATGAGATCAACTCAATGCTGCATCAAACGACAAA 1673
Query 1674 TTTGATGTTGGATTTGGAACATGAAGAAATTGAAAGATGAAACTTTCTTGTACATGCATT 1733
|||||||||||||||||||||| |||||||||| || |||||||||||||||||| |
Sbjct 1674 TTTGATGTTGGATTTGGAACATAAAGAAATTGATAGCTGAAACTTTCTTGTACAT---T- 1729
Query 1734 CTCTAACTACTGCCCTTAAATCATTAACATTTGTTTCC 1771
||||||||||| |||||| ||||||||||||||||||
Sbjct 1730 CTCTAACTACTTCCCTTA--TCATTAACATTTGTTTCC 1765
> AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:16687637-16689502 REVERSE LENGTH=1866
Length=1866
Score = 60.2 bits (32), Expect = 7e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 308 TGTTCGACGAAATGCCTGAACGAGATGTTGTT 339
||||||||||||||||||||||||||||||||
Sbjct 275 TGTTCGACGAAATGCCTGAACGAGATGTTGTT 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5