BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473635
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31410.1 | Symbols: | putrescine-binding periplasmic protei... 2466 0.0
> AT1G31410.1 | Symbols: | putrescine-binding periplasmic protein-related
| chr1:11246914-11249359 REVERSE LENGTH=1769
Length=1769
Score = 2466 bits (1335), Expect = 0.0
Identities = 1608/1739 (92%), Gaps = 21/1739 (1%)
Strand=Plus/Plus
Query 1 TATCGATGGCTACGGCGACGATTCTTTCCTTGAAACCGCCGGCGAGCTTCTTCCACGGTG 60
||||||||||||||||| ||||| ||||| ||||||||||||||||||||| | ||| |
Sbjct 10 TATCGATGGCTACGGCGGCGATTATTTCCGTGAAACCGCCGGCGAGCTTCTACTGCGGAG 69
Query 61 GAAACCGACGCGACGGAGGAAGGGGAATCATTGTTGCACGAGTTTCTCGAGGCGAACGGT 120
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 70 GAAACCGACGCGACGGAGGAAGGGGAATCACCATTGCACGAGTTTCTCGAGACGAACGGT 129
Query 121 TTCATGAGAGGATCGTTGGTCTCTCCGCTTCGACTGTGTTGTTCCTCGGTTTAAGCAGCC 180
||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| ||||
Sbjct 130 TTCATGAGAGGATCGTTGGTCTCTCTGCCTCGACCGTGTTGTTCATCGGTTTAAGTAGCC 189
Query 181 TTCGCGTCTGTTCTCCGGCCTCCGCTCGATTACTACCTCCGCCGATTATCGTTACAGAGA 240
| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 190 TCCGCGTCTGTTCTCCGGCCTCCGCTCGAATACTACCACCGCCGATTGTCGTTACAGAGA 249
Query 241 ATGAAATCAATACAGAAACTGTAGCTGGTGAAGAGAATCTAATTGATGTTGACGAT--A- 297
|||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| |
Sbjct 250 ATGAAATCAACACAGAAACTGTAGCTGGTGAAGAGAATCTAAATGAAGTTGAAGATGAAG 309
Query 298 AAAAATTGGAAGCAGATTTCGAAGCTTATAAGGCTAAAGTGTATTCTCTGACGGTGCCGC 357
||||| ||||||| ||||||||||| || ||| |||||||||||||||| || || ||||
Sbjct 310 AAAAACTGGAAGCTGATTTCGAAGCGTACAAGTCTAAAGTGTATTCTCTTACTGTCCCGC 369
Query 358 TAAAACTCGTTGCCTTGCGTGGCTCAGTGCCACCATCATGGATCAAGGAGTTTATGAGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TAAAACTCGTTGCCTTGCGTGGCTCAGTGCCACCATCATGGATCAAGGAGTTTATGAGCT 429
Query 418 CACAAGGGAAGAGAGTGAGGTTAAAGACTCGGTTTCGAGCAAACCTTGAAGAGATTTTCT 477
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| || |
Sbjct 430 CACAAGGGAAGAGAGTGAGGTTAAAGACTCAGTTTCGAGGAAATCTTGAAGAGATCTT-T 488
Query 478 TT-GATTTATCGAAGCCTACTAGGAAAGGACAAAAGGGTTCCGCTTCAACTGCAGCAGCT 536
|| ||| ||||||| || | || ||| ||| ||||||| | ||||||||||||||||||
Sbjct 489 TTCGATCTATCGAAACCAAGTAAGAATGGAAAAAAGGGGGCTGCTTCAACTGCAGCAGCT 548
Query 537 GATATGATCAGCATTGGTGATTCTTGGCTTAGTTATGCTATTAGGGAGAAGCTGATTGAG 596
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 549 GATATGATCAGCATTGGTGATTCTTGGCTTAGTTTTGCTATTAAGGAAAAGCTAATTGAG 608
Query 597 CCAATGAAAGGGATAGAAGATCAAGACTGGTATAAAGGCTTGAGTGATAAATGGAAGATT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCAATGAAAGGGATAGAAGATCAAGACTGGTATAAAGGCTTGAGTGATAAATGGAAGATT 668
Query 657 TATCTCCGCAGGAACTATTCGGGAGAAAAAGCTCCTGATGGTGAAACGTGGGCTGTGCCA 716
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 669 TATCTCCGCAGGAACTATGCGGGAGAAAAAGCTCCTGACGGTGAAACGTGGGCTGTGCCA 728
Query 717 TACCGATGGGGCACCATGGTAATAGCATACAAAAAGAGCAAATTTCAGAATTATAAATTG 776
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 729 TACCGCTGGGGCACCATGGTTATAGCATACAAAAAGAGCAAATTTCAGAATTATAAATTG 788
Query 777 GCTCCGATAGAGGACTGGGCTGATCTGTGGCGACCCGAGCTTGCAGGGAAG-ATCGCAAT 835
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 789 GCACCGATAGAGGACTGGGCTGATCTGTGGCGACCCGAGCTTGCAGG-AAGGATCGCAAT 847
Query 836 GGTGAATTCTCCTAGAGAGGTTGTTGGTGCTGTTCTCAAATACATGGGAGCATCATACAA 895
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 848 GGTGAATTCTCCTAGAGAGGTTGTTGGTGCTGTTCTCAAATACATGAGAGCATCATACAA 907
Query 896 CACGACAGACCTGGATTCACAAGTTGTTGGAGGAAGAATCGCCGTGGAGAAAAATCTAGC 955
|||||||||||||||||||||||| ||| |||||| | || |||||||||||||| ||
Sbjct 908 TACGACAGACCTGGATTCACAAGTTCCTGGCGGAAGATTAGCAGTGGAGAAAAATCTGGC 967
Query 956 ATCACTCATGAAACAGATTAGACTGTTTGACAGTAACAACTATTTAAAAGCTTTCAATGT 1015
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 968 ATCACTCATGAAACAGATTAGACTATTTGATAGTAACAACTATTTAAAAGCTTTCAATGT 1027
Query 1016 TGGAGATGTTTGGGTCACTGTTGGGTGGAGCAGTGATGTTATCCCTGTTGCAAAACGTAT 1075
|||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1028 CGGAGATGTCTGGGTCACTGTTGGTTGGAGCAGCGATGTTATCCCTGTCGCAAAACGTAT 1087
Query 1076 GTCTAATGTTACAGTGATTGTTCCCAAATCCGGTGCTACCTTATGGGCTGATCTATGGGC 1135
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1088 GTCTAATGTTACAGTGATTGTTCCCAAATCCGGTGCCACCTTATGGGCTGATCTATGGGC 1147
Query 1136 AATCCCAGCTGTCTCTGACTCTGGTAAAGAAGCGGAACAGATAGGAGGAAGAGTCCGAGG 1195
||||| ||||| |||||||||||||||||||| ||||| | ||||||| ||||||||||
Sbjct 1148 GATCCCGGCTGTTTCTGACTCTGGTAAAGAAGCAGAACAAAGAGGAGGACGAGTCCGAGG 1207
Query 1196 CCCATCTCCATTAATCAACCAGTGGATAGAATTCTGCTTGCAACCCGCAAGATCATTACC 1255
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1208 CCCATCTCCATTAATCAACCAGTGGATAGAATTCTGCTTGCAACCTGCAAGATCGTTACC 1267
Query 1256 CTTCACACGGGAAGTGATTCCTGGTGCATCTCCTTCAGCACTTGATGGTCCTCTGGTTAG 1315
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1268 ATTCACACGGGAAGTAATTCCTGGTGCATCTCCTTCAGCTCTTGATGGTCCTCTGGTTAC 1327
Query 1316 AGAACTCGAAAAAACAAAGAAAGACAGAACAAAACTGGACACAAACCTGGTCACAGGTGT 1375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 AGAACCCGAAAAAACAAAGAAAGACAGAACAAAACTGGACACAAACCTGGTCACAGGTGT 1387
Query 1376 TCCTCCTCCAGAGATCTTGTCTAAGTGTGAGTTCTTGGAACCTTTACCAGAGGCTACGCT 1435
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TCCTCCTCCGGAGATCTTGTCTAAGTGTGAGTTCTTGGAACCTTTACCAGAGGCTACGCT 1447
Query 1436 ATTGGAATACCGGCTTCTGATTGAAACTGTAAGAAAGCAAAGCCAAAGACAC-GGCCTTG 1494
|| |||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1448 ATCGGAATATCGGCTTCTGATTGAAACTGTAAGGAAGCAAAGCCAAAGAC-CTGGCCTTG 1506
Query 1495 TGAAGAAAATACAGGACATTGTTTCAATTAAGGTTCGAGGATTTAGGACAAAGCTTGACT 1554
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1507 TGGAGAAACTAAAGGACATTGTTTCAATTAAGGTTCGAGGATTTAGGGCAAAGCTTGACT 1566
Query 1555 CCGGG-TCGAA---GAACATTTGAGAGACTGACAAAAAGTGGAAATAAAATCATTTGTAT 1610
||| | | ||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 1567 CCGAGAT-GAATAAGAACATTTGAGAGACGGACAAAA-GTGGAAATGGAATCATTTGTAT 1624
Query 1611 GGTTAATTACTTAGAGCAACTTCACGTTGTTTAACA-ATGGGATTTTTCTATCTCCTTGT 1669
| | |||| ||||||||||||| |||| |||||| | ||| |||| |||||||||| |
Sbjct 1625 G---A-TTACATAGAGCAACTTCATGTTGGTTAACATAAGGGGTTTT-CTATCTCCTTAT 1679
Query 1670 AACAAAGTATCATGTCATGAAGAGCTAGAGGCTGATCAAATTTGCTCATGTTATTAGTT 1728
|||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1680 AACAGAGTATCATGTCATGAAGAGCCAGAGGCTGATCGCCTTTGCTCATGTTACTAGTT 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5