BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473638
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquit... 972 0.0
AT1G55060.1 | Symbols: UBQ12 | ubiquitin 12 | chr1:20549533-205... 158 8e-38
> AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquitin
1 | chr1:11217845-11219458 REVERSE LENGTH=743
Length=743
Score = 972 bits (526), Expect = 0.0
Identities = 604/641 (94%), Gaps = 8/641 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaTGCAGATCTTCGTCAAAACCCTGACCGGAAAAACCATAACCCTAGAGGTC 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 33 AAAAAAAAAATGCAGATCTTCGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTC 92
Query 61 GAAAGCAGCGACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAGAGGGAATACCA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 93 GAAAGCAGCGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATACCA 152
Query 121 CCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAACTTGAAGATGGTCGAACATTAGCG 180
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 153 CCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAAGATGGTAGAACATTAGCG 212
Query 181 GATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTTGAGGCTTAGGGGTGGGACT 240
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 213 GATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTGAGGCTTAGGGGTGGGACT 272
Query 241 ATGATTAAGGTCAAGACTCTCACTGGGAAGGAAATTGAGATTGATATCGAACCAAACGAT 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 273 ATGATTAAGGTGAAGACTCTCACAGGGAAGGAAATTGAGATTGATATCGAACCAACCGAT 332
Query 301 ACTATTGATCGGATCAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 ACTATTGATCGGATTAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAA 392
Query 361 AGGCTCATCTACGCAGGAAAACAGCTAGCTGATGACAAAACGGCAAAAGACTACGCCATA 420
||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 393 AGGCTAATCTACGCCGGAAAACAGCTAGCTGATGACAAAACGGCAAAGGACTACAACATA 452
Query 421 GAGGGGGGCTCTGTTCTTCATCTGGTTCTTGCTCTTAGGGGTGGTTTTGGTCTTCTCTGA 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 453 GAGGGAGGCTCTGTTCTTCATCTGGTTCTTGCCCTTAGGGGTGGTTTTGGTCTTCTCTGA 512
Query 481 GAAGTAACTATTAAACATATATCTTTTTCTGTTTTCCTTTGTATGGCTTGTTGGAGTTCA 540
||||||||| || || |||| |||||||| | |||||||||||||||||||||||
Sbjct 513 GAAGTAACTCTTGAAGATAT--CTTTTTCT-----C-TTTGTATGGCTTGTTGGAGTTCA 564
Query 541 TGGGGAAAAAGTGAATGCAATTTGGATATGATGCTTTGAATATTATGTTGTTTCAGTGGG 600
|||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 565 TGGGAAAAAAGTGATTGCAATTTGGATATGATACTTTGAATATTATGCTGTTTCACTGGG 624
Query 601 TTTGGATTAACTTACCAATAATCTGTTAAATATCGAATCAT 641
||||||| | ||||||||||||||||||||||||||||||
Sbjct 625 TTTGGATCATTTTACCAATAATCTGTTAAATATCGAATCAT 665
> AT1G55060.1 | Symbols: UBQ12 | ubiquitin 12 | chr1:20549533-20550225
FORWARD LENGTH=693
Length=693
Score = 158 bits (85), Expect = 8e-38
Identities = 174/216 (81%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 10 ATGCAGATCTTCGTCAAA-ACCCTGACCGGAAAAACCATAACCCTAGAGGTCGAAAGCAG 68
|||||||| ||||| ||| || |||| ||||| ||||| || || || || ||||||
Sbjct 457 ATGCAGATTTTCGT-AAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGC-T 514
Query 69 C-GACACCATCGACAATGTCAAAGCCAAA-ATCCAGGACAAAG-AGGGAATACCACCTGA 125
| || || || |||||||| ||| |||| || |||||||||| |||| || |||| ||
Sbjct 515 CTGATACGATTGACAATGT-GAAGGCAAAGATTCAGGACAAAGAAGGG-ATTTCACCAGA 572
Query 126 TCAACAGAGGTTGATATTTGCTGGTAAGCAACTTGAAGATGGTCGAACATTAGCGGATTA 185
|||||||| | || ||||| || ||||| | |||||||||||| || |||||||||||
Sbjct 573 CCAACAGAGACTCATCTTTGCAGGCAAGCAGCATGAAGATGGTCGCACTTTAGCGGATTA 632
Query 186 CAACATCCAGAAAGAGTCGACTCTTCAC-TTGGTCT 220
|||||||||||||||||| ||||||||| ||| |||
Sbjct 633 CAACATCCAGAAAGAGTCAACTCTTCACCTTGTTCT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5