BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473639

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   586    6e-167


> AT1G31335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 34 Blast hits 
to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:11216914-11217393 REVERSE 
LENGTH=480
Length=480

 Score =  586 bits (317),  Expect = 6e-167
 Identities = 419/465 (90%), Gaps = 19/465 (4%)
 Strand=Plus/Plus

Query  1    AAAAAACAATCAGAAAGAAGATTGAAAC-TAGA--TC-----TCAAGATCGATGGGTTTG  52
            ||||| |||||||||||||||||| ||| ||||  ||     ||||||||||||||||||
Sbjct  15   AAAAATCAATCAGAAAGAAGATTG-AACATAGATCTCAAGAGTCAAGATCGATGGGTTTG  73

Query  53   GTTGTGGTCATATCTCTGCCTCTAATTTTCTTCTGTCTACTTCTTGGATTCGGTTGCTAC  112
            |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct  74   GTTGTGGTCATATCTCTGCCTCTAATTTTCTTCTGTCTACTTCTCGGATTTGGCTGCTAC  133

Query  113  TTCCTTGGCAAATCTCGTGGCCGCCATGAAATCCGTACAAATCCTCAGGTGTATGGAGCT  172
            ||||| || |||||||| ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  134  TTCCTCGGAAAATCTCGCGGCCGTCGTGAGATCCGTACAAATCCTCAGGTGTATGGAGCT  193

Query  173  CCTGCTCCGCCTCCCGGCGCAATCGCCGCCTCTTCTCCACCGTTGTCTCCTCA-GACCAA  231
            || |||||||||||||| || ||||||||||| ||||| ||||||||||| || | ||||
Sbjct  194  CCAGCTCCGCCTCCCGGTGCTATCGCCGCCTCCTCTCCGCCGTTGTCTCCACACG-CCAA  252

Query  232  GCCCGACAATTCTCACAACGTCTGATTTTCCTT-ATTTTTTCT-CTCTGTCTATCTTGTT  289
            ||||||||||||||||||||||||||||||||| ||||| ||| || ||||| ||||| |
Sbjct  253  GCCCGACAATTCTCACAACGTCTGATTTTCCTTCATTTTCTCTTCTTTGTCTGTCTTGCT  312

Query  290  TGTCTCTATTGGAAGATGCTTTTGTTTGACTTATTGTGAAATGTTGTACTTGTAACTTGT  349
            |||||||||||||||||||||||||||||||||||||||| | | ||  | |||||||||
Sbjct  313  TGTCTCTATTGGAAGATGCTTTTGTTTGACTTATTGTGAA-T-T-GT--T-GTAACTTGT  366

Query  350  AATCTTTTGATTGTCTCTAGTTTTCTTGGGATAAATTCCCTTCTTCATTTGTGTATTTTC  409
            |||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct  367  AATCTTTTGATTGTCTTTAGTTTTCTTGGGATGAATTTCCTTCTTTATTTGTGTATTTTC  426

Query  410  TTTTCTCTTTAATGTAAATAAGAAAGCTAGTAATGGTTTACACAT  454
             | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct  427  CTATCTCTTTGATGTAAATAAGAAAGCTAGTAATGGTTTACACAT  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5