BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473644
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31300.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1772 0.0
> AT1G31300.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:11193693-11196312 FORWARD
LENGTH=1410
Length=1410
Score = 1772 bits (959), Expect = 0.0
Identities = 1173/1270 (92%), Gaps = 39/1270 (3%)
Strand=Plus/Plus
Query 300 AGGTGGTAGAATGATGAAATGAGAATCGATTTAT-AGAGTTGAAAGAGCAGCAAAATCTG 358
|||||||||||||||||||||||||||||| || |||||| |||||||| || |||||
Sbjct 145 AGGTGGTAGAATGATGAAATGAGAATCGATAGATAAGAGTTTAAAGAGCACCAGAATCTT 204
Query 359 TATTATATCTGCAATGTCGACGACGTCTTTGCAAACGATTGGTGCTATTAAGTCTTATCA 418
| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TGTTATCT-TGCAATGTCGACGACGTCTTTGCAAACGATTGGTGCTATTAAGTCTTATCA 263
Query 419 TCATCAAGCTCAGCATTTGGTTAAGAACTATCTCTTAGCTGATCCTTTTATTCCTTATAC 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 264 TCATCAAGCTCAGCATTTGGTTAAGAATTATCTCTTAGCTGATCCTTTTATTCCTTACAC 323
Query 479 TTCTGTCCTCACCGGCATTTTCCTTTGCAAAGTGGTTTATGATCTTTGTCACTTTATCAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 TTCTGTCCTCACCGGCATTTTCCTTTGCAAAGTGGTTTATGATCTTTGTCATTTTATCAG 383
Query 539 CAACTCACATTCTAAGACTTATATCATCCTCACTAAAATTCAAAGAATCGAATGGAATAA 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 384 CAACTCACATTCTAAGACTTATATCATCCTCACGAAAATTCAAAGAATCGAATGGAATAA 443
Query 599 CCGTGGTATCTCAACAGTTCATGCTATTTTTATCTCGGCTTTGTCCCTGTACTTTGTCTT 658
|||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 444 CCGTGGTATCTCGACAGTTCATGCTATTTTTATTTCGGCTATGTCGCTGTACTTTGTGTT 503
Query 659 CTGGTCCGATCTCTTTTCCGATAGGTGGCATAATGATCTTGTTGTTTTCCGGAGCTCACG 718
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTGGTCCGACCTCTTTTCCGATAGGTGGCATAATGATCTTGTTGTTTTCCGGAGCTCACG 563
Query 719 GCTTTCTTCTCTTGGTTTAGGGATATCTATTGGTTACTTCCTTGCCGATCTTGGGATGAT 778
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 564 ACTTTCTTCTCTTGGTTTAGGGATATCTATTGGTTACTTCCTTGCTGATCTTGGGATGAT 623
Query 779 CTTCTGGAAATATCCTTCTTTGGGTGGAATTGAGTATATTGTGCATCACTCGTTATCGGG 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 624 CTTCTGGAAATATCCTTCTTTGGGTGGAATTGAGTATATTGTGCATCACTCGCTATCGGG 683
Query 839 AGTAGCAGTTGCATACTCTTTGTTTTCTGGGGAAGGACAGTTGTATACCTACATGGTCCT 898
|| |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 684 GGTTGCAGTTGCCTACTCTTTATTTTCCGGGGAAGGACAGTTATATACCTACATGGTCCT 743
Query 899 CATCTCAGAGATTACAACCCCGGAGATCAACTTGAGATGGTACCTGGACACAGCTGGTAT 958
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 744 CATCTCCGAGATTACAACCCCAGAGATCAACTTGAGATGGTACCTGGACACGGCTGGTAT 803
Query 959 GAAGAAGTCATTGGCATATGTTGTTAATGGCGTTTTCATCTTCTTGGCTTGGCTGGTTGC 1018
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GAAAAAATCATTGGCATACGTTGTTAATGGCGTTTTCATCTTCTTGGCTTGGCTGGTTGC 863
Query 1019 TAGAATTCTACTGTTCATATACATGTTTTATCATGTTTATCTCCACTACAATCAGGTCAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 864 TAGAATTCTACTGTTCATATACATGTTTTATCATGTTTATCTCCACTACAACCAGGTCAT 923
Query 1079 GAGGATGCACATCTTCGGTTACGTTCTGGTATTCGGCGTACCAGCTGCTCTCGGTGTCAT 1138
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 924 GAGGATGCACATCTTTGGTTACGTTCTGGTATTCGGCGTACCAGCTGCGCTCGGTGTCAT 983
Query 1139 GAACTTGATATGGTTTGGCAAGATTGTGAGAGGGGTAAAGAAAACATTAGCAAAGAGATG 1198
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GAACTTGATATGGTTCGGGAAGATTGTGAGAGGGGTAAAGAAAACATTAGCAAAGAGATG 1043
Query 1199 TGAATGTTGAGATTGGTGAGTCTTCCTCAC-C--TT-CTTCA-T-C--C--CTC-T---- 1243
|||||||||||||||||||||||||||||| | || ||||| | | | ||| |
Sbjct 1044 TGAATGTTGAGATTGGTGAGTCTTCCTCACACCGTTTCTTCACTTCATCATCTCCTTACT 1103
Query 1244 -----G--------ACATATGTATGTCTCTCTAGTGTAAGTAGTTTTTGTCTGATGGAGa 1290
| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1104 TCTTCGTCCCTCTGACATATGCCTGTCTCTCTAGTGTAAGTAGTTTTTGTCTGATGAAGA 1163
Query 1291 aagaaaaacaaaaagaagcaaaaaTGATTAATGATACGATCCTCTGACTCTGTAAATGAT 1350
||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1164 AAGAAAAACGAAAA-AA-CAAAAATGAT-AATGATACGATCCTCTGACTCTGTAAATGAT 1220
Query 1351 CAAAAATTCAAGTCTCTT-T--ACGTTTTCTCATTATACAATGTAATTCTGTTTGCATTC 1407
||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 1221 CAAAA-TTCAAGTCTCTTCTTTACGTTTTCTCATTATACAATGTAATTCTGTTTTCATTC 1279
Query 1408 TTATAGCTTTGGCTCTAGGGTATTAATTTAATTTCTGCTACATTTGGTTTTACCGGAGAT 1467
| |||| ||||| |||||||| || ||| |||||||||||||||| |||| ||||||| |
Sbjct 1280 TAATAGTTTTGGTTCTAGGGTTTTGATTCAATTTCTGCTACATTTCGTTTAACCGGAGTT 1339
Query 1468 CGGTACAGTACTACCCAAATGATGAA-A-CTATTTTGTGTTCAAGTTCTATAGAAGAAAA 1525
|| |||||||||||| |||||||||| | || ||| ||||||||||||||| ||||| ||
Sbjct 1340 CGATACAGTACTACCAAAATGATGAACAACTGTTTGGTGTTCAAGTTCTATGGAAGAGAA 1399
Query 1526 AACATTTGGT 1535
||||||||||
Sbjct 1400 AACATTTGGT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5