BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473646
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34760.1 | Symbols: GRF11, GF14 OMICRON, RHS5 | general regu... 1166 0.0
AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory fa... 228 9e-59
> AT1G34760.1 | Symbols: GRF11, GF14 OMICRON, RHS5 | general regulatory
factor 11 | chr1:12743848-12745648 REVERSE LENGTH=1027
Length=1027
Score = 1166 bits (631), Expect = 0.0
Identities = 761/820 (93%), Gaps = 24/820 (3%)
Strand=Plus/Plus
Query 1 AGAACAAAAGTCTCAATTCgagagagaaaagagaagagagaaagagaagctatggagaag 60
|||||||||||||||||||||||||| | || ||||| || ||||||||||||||||
Sbjct 1 AGAACAAAAGTCTCAATTCGAGAGAG---A-AG-AGAGA-AAGGAGAAGCTATGGAGAAC 54
Query 61 gagagagagaaTCAAGTGTACTTGGCCAAACTCAACGAGCAAGCTGAGAGATACGATGAG 120
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 55 GAGAGAGCGAAGCAAGTGTACTTGGCGAAACTCAACGAGCAAGCTGAGAGATACGATGAG 114
Query 121 ATGGTTGAAGCAATGAAGAAAGTTGCAGCTCTTGATGTGGAGCTCACAATTGAAGAGAGG 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 115 ATGGTTGAAGCAATGAAGAAAGTTGCAGCTCTTGATGTAGAGCTCACCATTGAAGAGAGG 174
Query 181 AATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCGTCGTGGAGGATC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 AATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCATCGTGGAGGATC 234
Query 241 CTTTCTTCGATTGAGCAGAAAGAAGTATCGAGGGGAAACGAACAAAATGCAAAGAGGATT 300
||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 235 CTTTCTTCGATCGAGCAGAAAGAAGAATCGAAAGGAAACGAACAAAATGCCAAGAGGATT 294
Query 301 AAGGATTACAGGACAAAGGTTGAAGAAGAGCTCTCCAAGATCTGTTACGATATTTTGGCT 360
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 295 AAGGATTACAGGACAAAAGTTGAAGAAGAACTCTCCAAGATTTGTTACGATATTTTGGCT 354
Query 361 GTCATAGATAAGCATCTTGTCCCATCCGCAACTTCGGGAGAATCCACGGTCTTCTACTAC 420
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 355 GTCATCGATAAGCATCTTGTCCCATTCGCAACTTCGGGAGAATCCACCGTCTTCTACTAC 414
Query 421 AAGATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTGCTGATCGCGAA 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAAATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTGCTGATCGCGAG 474
Query 481 GAAGCTGCGGACCAATCACTCAAGGCGTATGAAGCTGCAACGACTTCAGCTAGCTCGGAA 540
||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 475 GAAGCTGCGGACCTATCACTCAAGGCGTATGAAGCTGCAACGAGTTCTGCTAGCACGGAA 534
Query 541 TTATCTACAACACATCCAATAAGACTCGGCTTGGCTCTCAACTTTTCTGTATTCTACTAC 600
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 TTGTCTACAACACATCCAATAAGACTCGGCTTGGCTCTCAACTTTTCTGTCTTCTACTAC 594
Query 601 GAGATCTTGAATTCACC--A--GA--A---C----G-C---GT-AGCGTTTGATGAGGCA 642
|||||||||||||| || | || | | | | | |||||||||||| |||
Sbjct 595 GAGATCTTGAATTCTCCGGAAAGAGCATGTCATTTGGCAAAGCGAGCGTTTGATGAAGCA 654
Query 643 ATCACTGAGCTTGACAGTCTTAACGAAGATTCATACAAGGACAGCACACTTATCATGCAA 702
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATCGCTGAGCTTGACAGTCTTAACGAAGATTCATACAAGGACAGCACACTTATCATGCAA 714
Query 703 CTTCTCAGAGATAACCTCACTTTATGGACCTCTGATCTAGAGGAAGGAGGTGAACAATCT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTTCTCAGAGATAACCTCACTTTATGGACCTCTGATCTAGAGGAAGGAGGTGAACAATCT 774
Query 763 AAAGGCCATAACCCACAAGACGAGGTAAACAAGATCTAAA 802
||||||||||| | |||||| ||||||||||| |||||||
Sbjct 775 AAAGGCCATAATCAACAAGATGAGGTAAACAAAATCTAAA 814
> AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory
factor 12 | chr1:9156329-9157950 REVERSE LENGTH=1156
Length=1156
Score = 228 bits (123), Expect = 9e-59
Identities = 431/577 (75%), Gaps = 32/577 (6%)
Strand=Plus/Plus
Query 61 gagagagagaaTCAAGTGTACT-TGGCCAAACTCAACGAGCAAGCTGAGAGATACGATGA 119
|||||||||| | || || | |||| || ||| ||| ||||| ||| ||||||| ||
Sbjct 130 GAGAGAGAGACTTTTGTCTA-TATGGCTAAGCTCTCCGAACAAGCCGAGCGATACGACGA 188
Query 120 GATGGTTGAAG-CAATGAAGAAAGTTGC-AGCTCTTGATGTG-GAGCTCACAATTGAAGA 176
||||| || || | ||||||||||| || || || || | ||||| || | |||||
Sbjct 189 GATGG-TGGAGACGATGAAGAAAGTGGCGAG-GGTTAAT-AGCGAGCTGACTGTGGAAGA 245
Query 177 GAGGAATCTTTTATCTGTTGGTTACAAAAATGTGATTGGTGCTAGGAGAGCGTCGTGGAG 236
||||||||| || || ||||||||||| || ||||| || || || ||||| ||||||||
Sbjct 246 GAGGAATCTGTTGTCGGTTGGTTACAAGAACGTGATCGGAGCAAGAAGAGCTTCGTGGAG 305
Query 237 GATCCTTTCTTCGATTGAGCAGAAAGAAGTA-TCGAGGGGAAACGAA-CAAA-ATGCAAA 293
||| | || || || ||||||||||||| | || | || || ||| |||| || |||
Sbjct 306 GATAATGTCGTCCATCGAGCAGAAAGAAG-AGTCTAAAGGCAATGAATCAAACGTG-AAA 363
Query 294 GAGGATTAAGGATTACAGGAC-AAAGGTTGAAGAAGAGCTCTCCAAGATCTGTTACGATA 352
| || |||| ||| | | |||||| ||||| |||||| | || || || | || |
Sbjct 364 CA-AATCAAGGGTTA-TCGCCAAAAGGTAGAAGATGAGCTCGCTAACATTTGCCAAGACA 421
Query 353 TTTTGGCTGTCATAGATAAGCATCTTGTCCCATC-CGCAACTTC-GGGAGAATCCACGGT 410
|| | | |||| ||| ||||||| |||| || ||| || || ||| ||| | || ||
Sbjct 422 TTCTCACCATCATTGATCAGCATCTCATCCC-TCACGCTACCTCAGGG-GAAGCTACCGT 479
Query 411 CTTCTACTACAAGATGAAAGGAGATTATTTCAGATACTTGGCTGAATTTAAGTCCGGTGC 470
||||||||||||||||||||||||||||| | | ||||||||||| |||||| ||| ||
Sbjct 480 CTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAGTTTAAGACCGA-GC 538
Query 471 T-GATCGCGAAG-AAGCTGCGGACCAATCACTCAA-GGCGTATGAAGCTGCAACGACTT- 526
|| | |||| ||||||| || || || ||||| ||| ||||| |||||||| ||
Sbjct 539 AAGAGAG-GAAGGAAGCTGCTGAACAGTCTCTCAAAGGC-TATGAGGCTGCAAC-ACAAG 595
Query 527 CAGCTAGCTCGGAATTATC-TACAACACATCCAATAAGACTCGGC-TTGGCTCTCAACTT 584
| || ||| | || | || | | || |||||||| | || ||| ||| |||| |||||
Sbjct 596 CTGCAAGCACTGAGCT-TCCTTCGACCCATCCAATTCGTCTTGGCCTTG-CTCTTAACTT 653
Query 585 TTCTGTATTCTACTACGAGATCTTGAATTCACCAGAA 621
||||| |||||||| |||||| |||| || || |||
Sbjct 654 CTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5