BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473651
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748... 1609 0.0
> AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748571-12750383
REVERSE LENGTH=1456
Length=1456
Score = 1609 bits (871), Expect = 0.0
Identities = 1043/1123 (93%), Gaps = 23/1123 (2%)
Strand=Plus/Plus
Query 291 AGGGTTCCGTTTTGTGCTACGAGGTCTGTTAAAGATTCCATCTTTGGGTTTCGAGATCAG 350
|||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||
Sbjct 329 AGGGTTCCGTTTTGTGCTACGAAATCTGCTAAAGATTCAATCTTTGGGCTTCGAGATCAG 388
Query 351 ACTTGTCCTGTTTCTGGTGTTGAATCAGACGAGCGTCCTCATTTTGGTGCCGTCACCGAG 410
|||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 389 ACTTGTTCTGTTTCTGGTGTTGAATCAGACGAGCGTCCTCGTTTTGTTGCTGTCACCGAG 448
Query 411 GGTGATGAGCGTTGGTTGCAATTGGCTTTGGATATAATTCATAAGAATAAGTGTGATTAT 470
||||||||||||||||||||| | || |||||||| ||||||||||| ||||||||||||
Sbjct 449 GGTGATGAGCGTTGGTTGCAAATAGCATTGGATATGATTCATAAGAACAAGTGTGATTAT 508
Query 471 GTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTTTCAAGGTCATTTAGACCGAGTTTC 530
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 509 GTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTTAGACCGAGTTTC 568
Query 531 GATGTTAT-TGCTTCTCTCTATTCCTCGATTCCTCATTTTGCGATTAAGGAATCATCCGT 589
|||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 569 GATGTTATCT-CTTCTCTCTATTCCTCCATTCCTCATTTTGCCATTAAGGAATCATCCAT 627
Query 590 TAAGCCGAGTACCCTTTCTAAGTATGGAGTTCATGGGTTTCCCACTCTTTTGCTTTTGAA 649
|||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 628 TAAGCCTAGCACCCTTTCCAAGTATGGAGTTCATGGGTTTCCCACTCTCTTACTTTTGAA 687
Query 650 TTCGACAATGCGGGCACGATACCGAGGAACCAGAATGCTTGATTCTCTTGTTGCTTTCTA 709
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 688 TTCGACAATGCGGGCACGATACCGAGGAACCCGAATGCTTGATTCTCTTGTTGCTTTCTA 747
Query 710 CAGTGATGTTACCGGTATAGAAACGTTGGATAAAACTTCTCTTGACAAAAGCGTATCAGT 769
||||||||||||||| || || || ||||||||||||||||| || | ||||||||||||
Sbjct 748 CAGTGATGTTACCGGCATTGAGACATTGGATAAAACTTCTCTCGAGAGAAGCGTATCAGT 807
Query 770 TCCTCATCTCGGGAACCAAAACAACACCGAGCCAGAAAACTGCCCATTCACATGGGCAAG 829
|||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 808 TCCTCATCTCGGTAACGAAAACAACACAGAGCCAGAAAACTGTCCATTCACGTGGGCAAG 867
Query 830 ATCACCTGAGAATATGCTTCGACAAGAGACCTATCTGGCTCTTGCCATTGTATTCGTCCT 889
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 868 ATCGCCTGAGAATATGCTTCGACAAGAGACCTATCTAGCTCTTGCCATTGTATTCGTCCT 927
Query 890 GTTAAGATTGCTTCACTTGATATACCCTACACTCGTCGTGTTTATGAAATTCACTTGGAG 949
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 928 GTTGAGATTGCTTCACTTGATATATCCTACACTCGTCGTGTTTATGAAGTTCACTTGGAG 987
Query 950 ACGGATTGCTCAGAACATGAGACTGGAAAGCCTGCTAGAACATACCGTCGGGTTTCTAAG 1009
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 988 ACGGATTGCTCAGAACATGAGACTAGAAAGCCTGCTAGAACATACCGTCGGGTTTCTAAG 1047
Query 1010 CCGAGCTGTACAATTATGCATGCACAGAAGAAGCAATCTGCAGGGAGGAGCCATGAACGC 1069
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1048 CCGAGCTGTACAATTATGCATGCATAGAAGAAGCAATCTGCAGGGAGGGGCTATGAACGC 1107
Query 1070 CAGAGCTTGGGCCTCCAAGTCTTTGGCCACCGTCTCAATCGGGGATTCAAGCTCATCAAA 1129
||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1108 TAGAGCATGGGCCTCTAAGTCTTTGGCCACTGTCTCAATTGGGGATTCAAGCTCATCAAA 1167
Query 1130 CAGAAGAAGTTCATCTTCTCAGTGACTTCA-AACTTCTATAATTT---CA-----G--C- 1177
|||||||||||||||||||||||||||||| || ||||||||||| || | |
Sbjct 1168 CAGAAGAAGTTCATCTTCTCAGTGACTTCATAA-TTCTATAATTTTAGCAAATATGGTCA 1226
Query 1178 ----TAAAATGTTTTTGGCTGTATCATCCATCTGTTACAGCTTTTCAGGTTAAAGTTTTA 1233
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1227 CAGCTAAAATGTGTTTGGCTGTATCATGTTTCTGTTACAGCTTTTCAGGTTAAAGTTTTA 1286
Query 1234 CCTTTT-TCCTGTATAATCAGCAGT-T-CCTCTAGACCAACAACTTTGGAGAGGGCTTAA 1290
|| ||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1287 CCCTTTGTCCTGTATAATCAGCAGTGTTCCTCTAGACCAACAACTTTGGAGAGGGCTTAA 1346
Query 1291 TTCATAGCTGAACATTTTGTAGTAGAAGTGTATATGTCATCAGATGGCCAAATTATAAAA 1350
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1347 TTCATAGCTGAACATTTTGTAGTAGAAGTGTATATGTCATCAGATGGCAAAATTATAAAA 1406
Query 1351 GTCAA-TTCATAtttttttGTCAATATTGTATCAGAATTGGTC 1392
||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1407 GTCAAATTCATATTTTTTTGTCAATATTATATCAGAATTGGTC 1449
Score = 327 bits (177), Expect = 1e-88
Identities = 258/295 (87%), Gaps = 13/295 (4%)
Strand=Plus/Plus
Query 1 ACCCAGTACCAAGCAGCAACCACAACCGCCTTCTCCTCCTTCAATATCTCCCTCAAATCA 60
|||||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct 12 ACCCAGTACCCAGCAGCAACCACAACC-TCTTCTTCTTCTTCAATATCTCCCTCAAATAA 70
Query 61 CAAAATCCATTAACGCTGCACAAAAATCTCTCCA-TTAA-AAACGCCATTGATTCAATTC 118
|| | ||||||| ||||||| ||| |||||| || | || |||| ||||||||||||||
Sbjct 71 CAGATTCCATTACCGCTGCATAAATATCTCTTCAGTAAAGAAACATCATTGATTCAATTC 130
Query 119 CCAGAAACATCAACCTCTCACCTGTTTCTAATTTGTCGGCAACAACAAATCTGCAGCATT 178
|||||||||||||||||||||||||||| ||||||||||||||||||| | | |||
Sbjct 131 CCAGAAACATCAACCTCTCACCTGTTTCCAATTTGTCGGCAACAACAA--CA--A--ATT 184
Query 179 TCTATTCTGGGTTCTGTGAATTTCGTGGGGACagagagagaga--gagagagaTAGAGCT 236
|||||||||||||||||||||||||| |||| ||| | ||||| |||||||| ||||||
Sbjct 185 TCTATTCTGGGTTCTGTGAATTTCGTAGGGAGAGAAATAGAGATAGAGAGAGAGAGAGCT 244
Query 237 TCTGGGTATCGTTTAATGGAGAAG-AGGATCTTGTTGTTGCTATTGGTCATGATG 290
||||||||| ||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 245 TCTGGGTATTTTTTAATGGAGAAGGAG-ATCTTGTTGTTGCTATTGGTCATCATG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5