BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473652
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers s... 1618 0.0
AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:73135... 174 1e-42
AT1G34828.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPA... 159 4e-38
AT1G34808.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPA... 159 4e-38
AT1G34813.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPA... 159 4e-38
AT1G34836.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPA... 159 4e-38
> AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers
superfamily protein | chr1:12763902-12765638 FORWARD LENGTH=1112
Length=1112
Score = 1618 bits (876), Expect = 0.0
Identities = 1005/1067 (94%), Gaps = 9/1067 (1%)
Strand=Plus/Plus
Query 1 TTTCATCACTCTCCAACCACTATTCACCACATTCAATGGAGT---CACCACTATACGAGA 57
||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 17 TTTCATCTCTCTCCAACAACTATTCACCACATTCAATGGAGTCACCACCACTATACGAGA 76
Query 58 TATCCTCAAGCTCTTCTTCTGAAAAACCTAGAAACCATTTCCAATCCCTTGATCTCTTCC 117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 77 TATCCTCAAGCTCTTCTTCTGAAAAACCTAGACACCATTTCCAATCCCTTGATCTCTTCC 136
Query 118 CTAACCTCAACCAAAACTCTTGTAACAACAATAACCTAATTGAGCCTTTACCGCTTATTG 177
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 137 CTAACCTCAACCAAAACTCTTGTATCAACAATACCCTAATTGAGCCTTTACCGCTTATTG 196
Query 178 ATCGGATAAACTTGAACTCAAACCTAGACCTAAACCCTAAGCCCTTGTATGCggaagaag 237
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 197 ATCGCATAAACTTGAACTCAAACCTAGACCTAAACCCTAATCCCTTGTATGCGGAAGAAG 256
Query 238 gagagcaagaggaggaagaagaagaag-ag--gaCGGTGAAGTGGACGTGAACTTACACA 294
||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||
Sbjct 257 GAGAGCAAGAGGAGGAAGAAGAAGAAGAAGAAGACCGTGAAGTGGACGTGGACTTACACA 316
Query 295 TCGGCCTTCCTGGTTTTGGTAAATCAGGCGATGGTGCTAAAGAGCTGAAGAAGAAAAATG 354
||||||||||||||||||||||| || || ||| ||||||| |||||||||||| |||||
Sbjct 317 TCGGCCTTCCTGGTTTTGGTAAACCAAGCAATGATGCTAAACAGCTGAAGAAGAGAAATG 376
Query 355 GGAAGGAGATCGCCACATATGATGCCGGAAAAGACATTGAGAATGAAGTTTCCGGCAAGG 414
|||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||
Sbjct 377 GGAAGGAGATCGCCACATATGACGCCGGAAAAGGCATCGAGAATGAACTTTCCGGAAAGG 436
Query 415 CATACTGGATCCCGGCGCCGGAGCAAATTCTCATAGGCTTCACTCATTTTTCTTGCCATG 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 437 CATACTGGATCCCGGCGCCGGAGCAAATTCTCATAGGGTTCACTCATTTTTCTTGCCATG 496
Query 475 TGTGCTTCAAGACATTCAATCGTTACAATAATCTTCAGATGCACATGTGGGGACATGGTT 534
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 497 TATGCTTCAAGACATTCAATCGCTACAACAATCTTCAGATGCACATGTGGGGACATGGTT 556
Query 535 CACAATACAGAAAAGGACCAGAGTCACTGAAAGGCACGCAGCCACGAGCCATGTTAGGGA 594
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 557 CACAATACAGGAAAGGACCGGAGTCACTGAAAGGCACACAGCCACGAGCCATGTTAGGGA 616
Query 595 TCCCTTGTTACTGCTGCGTCGAAGGGTGTAGGAACCACATTGACCATCCTCGTTCCAAGC 654
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 617 TCCCTTGTTACTGCTGCGTTGAAGGGTGCAGGAACCACATTGACCATCCTCGTTCCAAGC 676
Query 655 CACTCAAAGACTTTAGAACGCTCCAAACGCACTACAAACGCAAACACGGCCACAAACCCT 714
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 677 CACTGAAAGACTTTAGGACGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCT 736
Query 715 TCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGA 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TCTCGTGTCGCCTTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGA 796
Query 775 AGAACTGTGGGAAACGTTGGGTTTGCGTTTGCGGTTCTGATTTTAAACACAAACGTTCCC 834
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 797 AGAATTGTGGAAAACGTTGGGTTTGCGTTTGCGGTTCTGATTTTAAACACAAACGTTCTC 856
Query 835 TTAAGGACCATGTTAAAGCTTTTGGGCCTGGTCATGGGCCTTATCCGACTGGTTTGTTTG 894
|||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||
Sbjct 857 TTAAGGACCATGTTAAGGCGTTTGGGTCTGGTCATGGGCCTTATCCAACTGGTTTGTTTG 916
Query 895 AAGAGCAGGCTTCTAATTCATCTGTCTCCGAGACTTTGTTCTTTTAAATTTGGGCATCTT 954
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 917 AAGAGCAGGCTTCTAATTCATCTGTCTCCGAGACTTTGTTTTTTTAAATTTGGGCATCTT 976
Query 955 TTTTATTT-GCTTATGGACCATTTATTTACTTTAGAATAATAATA-TGTGGTACCTAATT 1012
||| ||| ||||||| | || |||||||||||||| ||||||| ||||||| ||||||
Sbjct 977 TTTC-TTTCGCTTATGAAATATCTATTTACTTTAGAAAAATAATAATGTGGTATCTAATT 1035
Query 1013 GTTTCGAATTAGGAATACGAAGTGTACCATTATATGTTTCATCTCTA 1059
||| | ||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 1036 GTTCCAAATTAGGAACACGAAGTGTACCATTATATTTTTCATCACTA 1082
> AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:7313538-7315883
REVERSE LENGTH=1551
Length=1551
Score = 174 bits (94), Expect = 1e-42
Identities = 306/406 (75%), Gaps = 24/406 (6%)
Strand=Plus/Plus
Query 477 TGCTTCAAGACATTCAATC-GTTACAATAATC-TTCAGATGCACATGTGGGGACATGGTT 534
||||||||||| ||||| | | ||||| || | | || ||||||||||||||||||||||
Sbjct 872 TGCTTCAAGACTTTCAA-CAGATACAACAA-CATGCAAATGCACATGTGGGGACATGGTT 929
Query 535 CACAATACAGAAAAGGACCAGAGTCACTGAAAGGCACGCAGCCA-CGAGCCATGTT-AGG 592
||||||||||||||||||| ||||| |||| ||| || || ||| || || ||| | | |
Sbjct 930 CACAATACAGAAAAGGACCGGAGTCGCTGAGAGGGACACAACCAACG-GCGATGCTGAAG 988
Query 593 GATCCCTTGTTACTGCTGCGTCGAA-GGG-TGTAGGAACCACATTGACCATCCTCGTTCC 650
| ||||| |||||||| | | | ||| || | |||| |||| ||||| || | |
Sbjct 989 C-TGCCTTGCTACTGCTGTG-C-ACCGGGCTGCAAGAACAACATAGACCACCCAAGGGCT 1045
Query 651 AAGCCACTCAAAGACTTTAGAACGCTCCAAACGCACTACAAACGCAAACACGGCCACAAA 710
| ||| ||||| ||||| | ||||| || || || ||||| || || ||||| |
Sbjct 1046 AGGCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGG 1105
Query 711 CCCTTCT-CGTGTCGCATTTGCGGTAAG-CTTTTGGCTGTCAAGGGCGATTGGCGAACAC 768
||||| | | ||||| | || || ||| | |||| | ||||| || |||||| | || |
Sbjct 1106 CCCTT-TGCTTGTCGTAGGTGTGGGAAGGCATTTG-CGGTCAAAGGAGATTGGAGGACTC 1163
Query 769 ATGAGAAGAACTGTGGGAAACGT-TGGGT-TTGCGTT-TGCGGTTCTGATTTTAAACACA 825
| ||||||||||||||||| | | ||| | |||| | || || || |||||||| ||||
Sbjct 1164 ACGAGAAGAACTGTGGGAAGC-TATGG-TATTGC-TCATGTGGGTCGGATTTTAAGCACA 1220
Query 826 A-ACGTTCCCTTAAGGACCATGTTAAAGCTTTTGGGCCTGGTCATG 870
| | || | ||||| ||||| ||||| || |||||| ||||||||
Sbjct 1221 AGAGGT-CACTTAAAGACCACGTTAAGGCCTTTGGGAATGGTCATG 1265
> AT1G34828.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPARENT
TESTA 1); transcription factor | chr1:12792409-12792700
FORWARD LENGTH=292
Length=292
Score = 159 bits (86), Expect = 4e-38
Identities = 116/129 (90%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 710 ACCCTTCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACA 769
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 80 ACCCTTCTCATGTCGCATTTGCGGTGAGCTTTTGGCTGTAAAGGGCGATTGGTGAACACA 139
Query 770 TGAGAAGAACTGTGGGAAACGTTGGGTTTG-CG--T----TTGCGGTTCTGATTTTAAAC 822
||||||||||||||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 140 TGAGAAGAACTGTGGGAAATATTGGGTTTGCCGTTTGCGGTTGCGGTTCTGATTTTAAAC 199
Query 823 ACAAACGTT 831
|||||||||
Sbjct 200 ACAAACGTT 208
> AT1G34808.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPARENT
TESTA 1); transcription factor | chr1:12778756-12779047
FORWARD LENGTH=292
Length=292
Score = 159 bits (86), Expect = 4e-38
Identities = 116/129 (90%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 710 ACCCTTCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACA 769
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 80 ACCCTTCTCATGTCGCATTTGCGGTGAGCTTTTGGCTGTAAAGGGCGATTGGTGAACACA 139
Query 770 TGAGAAGAACTGTGGGAAACGTTGGGTTTG-CG--T----TTGCGGTTCTGATTTTAAAC 822
||||||||||||||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 140 TGAGAAGAACTGTGGGAAATATTGGGTTTGCCGTTTGCGGTTGCGGTTCTGATTTTAAAC 199
Query 823 ACAAACGTT 831
|||||||||
Sbjct 200 ACAAACGTT 208
> AT1G34813.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPARENT
TESTA 1); transcription factor | chr1:12782171-12782462
FORWARD LENGTH=292
Length=292
Score = 159 bits (86), Expect = 4e-38
Identities = 116/129 (90%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 710 ACCCTTCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACA 769
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 80 ACCCTTCTCATGTCGCATTTGCGGTGAGCTTTTGGCTGTAAAGGGCGATTGGTGAACACA 139
Query 770 TGAGAAGAACTGTGGGAAACGTTGGGTTTG-CG--T----TTGCGGTTCTGATTTTAAAC 822
||||||||||||||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 140 TGAGAAGAACTGTGGGAAATATTGGGTTTGCCGTTTGCGGTTGCGGTTCTGATTTTAAAC 199
Query 823 ACAAACGTT 831
|||||||||
Sbjct 200 ACAAACGTT 208
> AT1G34836.1 | Symbols: | Pseudogene of AT1G34790; TT1 (TRANSPARENT
TESTA 1); transcription factor | chr1:12795824-12796115
FORWARD LENGTH=292
Length=292
Score = 159 bits (86), Expect = 4e-38
Identities = 116/129 (90%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 710 ACCCTTCTCGTGTCGCATTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACA 769
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 80 ACCCTTCTCATGTCGCATTTGCGGTGAGCTTTTGGCTGTAAAGGGCGATTGGTGAACACA 139
Query 770 TGAGAAGAACTGTGGGAAACGTTGGGTTTG-CG--T----TTGCGGTTCTGATTTTAAAC 822
||||||||||||||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 140 TGAGAAGAACTGTGGGAAATATTGGGTTTGCCGTTTGCGGTTGCGGTTCTGATTTTAAAC 199
Query 823 ACAAACGTT 831
|||||||||
Sbjct 200 ACAAACGTT 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5