BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473659
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35180.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1293 0.0
AT1G35170.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1038 0.0
> AT1G35180.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:12877107-12878719 REVERSE
LENGTH=894
Length=894
Score = 1293 bits (700), Expect = 0.0
Identities = 838/901 (93%), Gaps = 23/901 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaCCTTAGATAACAAAGTTGTG--TCTC-----TCTGAACCAGAAAGATAAGACA 53
||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 4 AAAAAGACCTTAGATAACAAAGTTGTGTCTCTCTGAAGTCTGAACCAAAAAGATAAGACG 63
Query 54 AAAAGGAGATCAATGGAGGAAGAATACATAAGAGTAATAAACATAACAATTATTGGAGTA 113
||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||
Sbjct 64 AAAAGGAGATCAATGGAGGAAGAATACGTAAGAGTAATAAGCATAACAACAATAGGAGTA 123
Query 114 ATCTCATGGGGTCTCATTTTCATCCTCATAAGACGAATTTTCGCAAACTACTCGTTCGAC 173
|||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||
Sbjct 124 ATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTTCTCAAGCTACTCGTTCGAC 183
Query 174 TTCAGCACTCGTATAGTCTCGACGCTTCACGCAACAACT-GCTGTCGTTTTAGCAACTCT 232
|||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct 184 TTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAA-TCGCTGTCACTTTAGCAACTCT 242
Query 233 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCAACGTCATCTCTCCGGCA 292
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 243 CTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCTACATCGTCTCTCCGGCA 302
Query 293 GATGGAAACGTTGGCGTTTTCATTGTCATACATGATCTATGATCTCATATGTAGCCACTT 352
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 303 GATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACGATCTCATTTGTAGCCACTT 362
Query 353 TGATCAAGTCATTAGCATTGATAATGCTGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 412
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 TGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTGTTTGCATTCTTGGTTTTGT 422
Query 413 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGA 482
Query 473 GATCTCGAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 532
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACAC 542
Query 533 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGT 602
Query 593 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCTGATAATCCCATCCTCATCAAGGC 652
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 603 GGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAGGC 662
Query 653 AATGGCGTTGGGATTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AATGGCGTTGGGGTTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGAT 722
Query 713 GAGATACAAATTTATCAAAAGATCAATGTCCAACCAAAAATCTACTTAGTTAAAATTCCA 772
|||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 723 GAGATACAAATTTATCAAAAGATCAATGTCCAACAAAAAATCGGCTTAGTTGAAATTCCA 782
Query 773 AATATTCTATCATATATATTATTTGACTCATATGCTTTTTCAGTTTTTCTATATGTAAAT 832
|| | |||||||| || | ||||||||||| | | |||| |||||||||| |
Sbjct 783 AAAACTCTATCATGTA-AC-ATTTGACTCAT---C-----C--TTTT-CTATATGTAAGT 829
Query 833 TAAATGTGAGGAATCCAAAGAAA-TGACTTAAACTTATAAATAAAAGATATGAAAATCCA 891
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 830 TAAATGTGAGGAATCCAAAGAAACTGACTTATACTAATAAATAAAAGATATGAAAATCCA 889
Query 892 T 892
|
Sbjct 890 T 890
> AT1G35170.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:12870738-12872194 REVERSE
LENGTH=745
Length=745
Score = 1038 bits (562), Expect = 0.0
Identities = 675/729 (93%), Gaps = 10/729 (1%)
Strand=Plus/Plus
Query 35 GAACCAGAAAGATAAGACAAAAAGGAGATCAATGGAGGAAGAATACATAAGAGTAATAAA 94
|||||| ||| ||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 25 GAACCAAAAATATAAGACGAGAAGGAGATCAATGGAGGAAGAATACATAAGAATAATAAG 84
Query 95 CATAACAATTATTGGAGTAATCTCATGGGGTCTCATTTTCATCCTCATAAGACGAATTTT 154
|||||||| || || |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 85 CATAACAACAATAAGAATAATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTT 144
Query 155 CGCAAACTACTCGTTCGACTTCAGCACTCGTATAGTCTCGACGCTTCACGCAACAACT-G 213
| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| | |
Sbjct 145 CTCAAGCTACTCGTTCGACTTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAA-TCG 203
Query 214 CTGTCGTTTTAGCAACTCTCTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTT 273
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CTGTCACTTTAGCAACTCTCTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTT 263
Query 274 CAACGTCATCTCTCCGGCAGATGGAAACGTTGGCGTTTTCATTGTCATACATGATCTATG 333
| || || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 264 CTACATCGTCTCTCCGGCAGATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACG 323
Query 334 ATCTCATATGTAGCCACTTTGATCAAGTCATTAGCATTGATAATGCTGTTCATCATTCTG 393
||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 324 ATCTCATTTGTAGCCACTTTGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTG 383
Query 394 TTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGG 443
Query 454 CAGCACTTTGGATAACAGAGATCTCGAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAG 513
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 444 CAGCAATATGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAG 503
Query 514 AGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTT 573
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 504 AGATTGGTTGTAGAGACACCGACCTAAATCTTGCAGCCGATGTGTTTTTTGCAACAATTT 563
Query 574 TCTCGTTGGCCAGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATATCAGCTGATA 633
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 564 TCTCGGTGGCCCGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATACCAGCTGATA 623
Query 634 ATCCCATCCTCATCAAGGCAATGGCGTTGGGATTACAACTTGTGAGCGCATTCTGGTTCT 693
|||||||||||||||||| ||||| |||||||||||||||||||||||| | ||||
Sbjct 624 ATCCCATCCTCATCAAGGTAATGGGGTTGGGATTACAACTTGTGAGCGC-----G-TTCT 677
Query 694 ATAAAATCCTCAAAATGATGAGATACAAATTTATCAAAAGATCAATGTCCAACCAAAAA- 752
||||| | |||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 678 ATAAATTACTCAAAATGATGAGATACAAATTTATTAAACGATCAATGTCCA-CCAAAAAA 736
Query 753 TCTACTTAG 761
|| || |||
Sbjct 737 TCGACGTAG 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5