BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473664
Length=3407
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 5208 0.0
> AT1G35220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; Has
313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria
- 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses -
0; Other Eukaryotes - 46 (source: NCBI BLink). | chr1:12908914-12914802
FORWARD LENGTH=3533
Length=3533
Score = 5208 bits (2820), Expect = 0.0
Identities = 3208/3386 (95%), Gaps = 63/3386 (2%)
Strand=Plus/Plus
Query 26 TTTCTCTGCCATCTCCGGTGTGTGCTCAGATAGCCAATTCCATGGAATTTGGGGAAGATG 85
||||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct 46 TTTCTCTGCAATCTCCGGTGTGTGCTCAGATAG---------TGAAATTTAGGGAAGATG 96
Query 86 CAGCACACTCCAGTAACAATAGAGGACCAGTTGATATCGAAAGCTGTAAGGGAAGAATGT 145
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 97 CAGCACACTCCAGTAACAATAGAGGACCAGTTAATATCGAAAGCTGTAAGAGAAGAATGT 156
Query 146 CCATGGGAAAACCTCCCGAAACGACTCCAATCTATTCTTGGGTCTAAGGATGAATGGCAT 205
| ||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 157 CAATGGGAAAACCTCCCAAAACGACTTCAATCGATCCTTGGGTCTAAGGATGAATGGCAT 216
Query 206 AGAAGGGTTACGGCGCATTGTATAAAGAAAAGACTTCTATGGAATACATGTTTTGCTTGT 265
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 217 AGAAGGGTTACGGCGCATTGTATAAAGAAAAGACTCCTATGGAATACGTGTTTTGCTTGT 276
Query 266 AAAGTTTGCAAAGAAGGTGAATATTATGAAGATATGATGCGTTACTTGCGAAAGAATCTG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AAAGTTTGCAAAGAAGGTGAATATTATGAAGATATGATGCGTTACTTGCGAAAGAATCTG 336
Query 326 GCGCTCTTTCCATACCACCTTGCAGAGTATGTTTGCCGTGTGATGAGGATATCACCTTTC 385
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GCGCTCTTTCCGTATCACCTTGCAGAGTATGTTTGCCGTGTGATGAGGATATCACCTTTC 396
Query 386 AGATACTACTGTGATATGATATTTGAAGTCATGAGAAATGAGCAACCTTATGACAGTATT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGATACTACTGTGATATGATATTTGAAGTCATGAGAAATGAGCAACCTTATGACAGTATT 456
Query 446 CCAAACTTCAGTGCGGCAGATGCTTTCCGGCTTACAGGAATAGGGAGGAATGAGTTCATT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CCAAACTTCAGTGCGGCAGATGCTTTCCGGCTTACAGGAATAGGGAGGAATGAGTTCATT 516
Query 506 GATATCATGAATAAATGCAGATCTAAGAAAATAATGTGGAAGCTGAATAAATCAATTGCA 565
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 517 GATATCATGAATAAATGCAGATCTAAGAAAATAATGTGGAAGCTGAACAAATCGATTGCA 576
Query 566 AAAGACTTCTTACCTACTCAACCTGTGGATTTCTCTATTGACCCTTGGTGGGGTGTTTGC 625
|||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 577 AAAGACTTTTTACCTACTCTACCTGTGGATTTCCCTATTGACCCTTGGTGGGGTGTTTGC 636
Query 626 CTTGTCAACTTCACCATAGAAGAGTTTAAGAAACTTTCAGAAGATGAGATGGCAACAATA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 637 CTTGTCAACTTCACCATAGAAGAGTTTAAGAAACTTTCAGAAGATGAGATGGCGACAATA 696
Query 686 GATAAAATCTGCAAAGAGGAAGCTAATGCATATATCCTCTTCGATCCAGAAGTCATAAAA 745
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 697 GATAAAATCTGCAAAGAGGAAGCTAATGCATATTTCCTCTTCGATCCAGAAGTCATAAAA 756
Query 746 GGCCTGTACCATAGGGGATTGGTATATTTTGATGTCCCAGTCTATCAGGACGACCGCTTT 805
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GGCCTGTACCAGAGGGGATTGGTATATTTTGATGTCCCAGTCTATCAGGACGACCGCTTT 816
Query 806 AAAGTTTCCAAGCTTGAAGGGTTCATCTCTAACAGAGAGCAGTCTTACGAAGATCCCATT 865
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 817 AAAGTTTCAAAGCTTGAAGGGTTCATCTCTAATAGAGAGCAGTCTTACGAAGATCCCATT 876
Query 866 GAAGAATTACTCTATGCAGTTTTTGTAGTTTCAAATGAGAACTCAACAGTTGCAGAGCTG 925
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 877 GAAGAATTACTCTATGCAGTTTTTGTTGTTTCAAATGAGAACTCAACAGTTGCAGAGCTG 936
Query 926 GCATCCACTTTGCAAGCTGACGTAACTCAATTACAGGCTGCTGCATCTTTTGTTTGCCGG 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GCATCCACTTTGCAAGCTGACGTAACTCAATTACAGGCTGCTGCATCTTTTGTTTGCCGG 996
Query 986 TTGGGATGGGCTGTCAAGTTAATTGATCCGTCATCTGTGCTTCATGACAAGATTATGTCT 1045
|||||||||||||||| ||||||||||||||||||||||||||||||||| | | |
Sbjct 997 CTGGGATGGGCTGTCAAATTAATTGATCCGTCATCTGTGCTTCATGACAAG---A--T-T 1050
Query 1046 GGGTCTCCACGTGCCGTCCTCAGTGATGACGAA-A---A--------T-GCATAT--TCT 1090
||||||||||||||| ||||||||||||||||| | | | |||||| |||
Sbjct 1051 GGGTCTCCACGTGCCATCCTCAGTGATGACGAAGATGCATCTCGCGCTAGCATATCCTCT 1110
Query 1091 ACCTACAAGTCCGCTGATGGTGAGGAGGCTCAACATGGAGATAGTTTAGGGACTGAAAGC 1150
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1111 ACCTACAGGTCTGCTGATGGTGAGGAGGCTCAACATGGAGATAATTTAGGGACTGAAAGC 1170
Query 1151 TCTGGATCACGTTCTAGTCATGTTCGGGTTGCTTTCATAGTTGATGCTAATATAACATCG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TCTGGATCACGTTCTAGTCATGTTCGGGTTGCTTTCATAGTTGATGCTAATATAACATCG 1230
Query 1211 TATTTAATGATGGGTTCTGTGTCACCAGGATTGAAATCTCATGCTGTGACACTCTATGAA 1270
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TATCTAATGATGGGTTCTGTGTCACCAGGATTGAAATCTCATGCTGTGACACTCTATGAA 1290
Query 1271 GCGGGAAAACTCGGACATACTAGTATCCCAGACCTTTGCCAGGATTTGAGCACATTAGAG 1330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 GCGGGAAAACTCGGACACACTAGTATCCCAGACCTTTGCCAGGATTTGAGCACATTAGAG 1350
Query 1331 GGAGCGAAATTTGAGGGTGAACTGCAAGAATTTGCAAATCATGCCTTTAGCCTTCGTTGT 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GGAGCGAAATTTGAGGGTGAACTGCAAGAATTTGCAAATCATGCCTTTAGCCTTCGTTGT 1410
Query 1391 GTCCTGGAATGTTTGATATCTGGTGGAGTTGCAACTGATACAATAGTTGATACAATGGGT 1450
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 1411 GTCCTGGAATGTTTGATATCTGGTGGAGTTGCTACTGATGCAATAGTTGACACAATGGGT 1470
Query 1451 TCGGGAACTTTGAGCAATGATGAGGCTGTTACTCTACTTGCAGATGTTAATTTACCTGAT 1510
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1471 TCGGGAACTTTGAGCAATGATGAGGCTGTTACTCTTCTTGCAGATGTTAATTTACCTGAT 1530
Query 1511 AATTCGGGAGATTCTTTAACTAGCCAAAATAGTGAGGCCTCCACGGTTTCAGACACCCCT 1570
||||| |||||||||||||||||||||| || |||||| |||| ||||||||| |||||
Sbjct 1531 AATTCCGGAGATTCTTTAACTAGCCAAATTATTGAGGCTTCCATGGTTTCAGATGCCCCT 1590
Query 1571 CAAGAGGATCCCTTGTCGACAGAGCATGTCCCTGAAAGCACTGAGCATGAAGCAGCTTCC 1630
||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1591 CAAGAGGTTCCCTTGTCGACAGAGCATGTCCCCGAAAGCACTAAGCATGAAGCAGCTTCC 1650
Query 1631 AGTACACCGTCTGTCGATACTACTGCCTTGACTGAGACCTTCAGTTCTAACCTTAACCTT 1690
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1651 AGTACACCGTCTGTCGATACTACTGCCTTGACTGAGACCTTCAGTTCCAACCTTAACCTT 1710
Query 1691 GAAAATGAGGGGAAGCCAATTCCTGTAGAGGGACCCGACACTGGTAAAGGAAACAAGAAA 1750
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1711 CAGAATGAGGGGAAGCCAATTCCTGTAGAGGGACCCGACACCGGTAAAGGAAACAAGAAA 1770
Query 1751 AGGAAAAAATATCGCGTTGATATTCTCCGTTGTGAAAGTCTTGCTTCTCTAACACCAGCT 1810
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1771 AGGAAAAAATATCGCGTTGATATTCTCCGTTGTGAAAGTCTGGCTTCTCTAACACCAGCT 1830
Query 1811 ACTCTAGATCGTTTGTTTTCCCGTGACTATGATATTGTTGTTTCAATGATTCCTCTTCCA 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 ACTCTAGATCGTTTGTTTTCCCGTGACTATGATATTGTTGTTTCAATGATTCCTCTTCCA 1890
Query 1871 CTTACGACTGTTCTTCCTGGACCGTCAGGCCCTGTTCATTTCGGTCCGCCCTCCCATTCA 1930
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1891 CTTACAACTGTTCTTCCTGGACCGTCAGGCCCTGTTCATTTCGGTCCTCCCTCCCATTCA 1950
Query 1931 TCCATGACACAGTGGATGAAATTGGTACTGTATTCAACCGTGGGCATTGGGCCTTTGTCG 1990
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1951 TCCATGACACAGTGGATGAAACTGGTACTGTATTCAACCGTGGGCATTGGGCCTTTGTCG 2010
Query 1991 GTTATCTTGATGAAAGGGCAGTGTCTGCGGATGCTTCCTGCTCCACTAGCTGGCTGTGAG 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 GTTATCTTGATGAAAGGGCAGTGTCTGCGGATGCTTCCTGCTCCACTAGCTGGCTGTGAG 2070
Query 2051 AAAGCTATCATTTGGTCTTGGGATGGATCTTCGGTTGGTGGTTTAGGAAACAAGTTTGAA 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 AAAGCTATCATTTGGTCTTGGGATGGATCTTCGGTTGGTGGTTTAGGAAACAAGTTTGAA 2130
Query 2111 GGTAACTTGGTCAAGGGAAGTATTTTGTTGCACTGTTTAAATTGCCTTCTCAAGTGCTCA 2170
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2131 GGTAACTTGGTCAAAGGAGGTATTCTGTTGCACTGTTTAAATTGCCTTCTCAAGTGCTCA 2190
Query 2171 GCTGTTCTTGTTCAGCCTCTCAGCAAGCATGATCTTGATAGCTCTGGAAGAATTGTTACT 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 GCTGTTCTTGTTCAGCCTCTCAGCAAGCATGATCTTGATAGCTCTGGAAGAATTGTTACT 2250
Query 2231 TTAGATATACCATTACCCCTGAAGAATTCTGATGGTTCCATTCCTCATTTCGGCGACGAG 2290
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 2251 TTAGATATACCATTACCCCTAAAGAATTCTGATGGTTCCATTCCTCATTTTGGTGATGAG 2310
Query 2291 CTTGGACTTCCCCTCGAGGAAAATACAAAGTTGAACTCTGTTTTAACTAAGCTGGCGAAC 2350
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 2311 CTTGGACTTCCCCTCGAGGAAAATACAAAGTTGAACTCTCTTTTAACTAAGCTTGCGAAC 2370
Query 2351 AACATGGAATTGAAGACAGTCGGTTACATTCGCCTTTTGAAACTCTTTAAAGCAAAGGAT 2410
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 AATATGGAATTGAAGACAGTCGGTTACATTCGCCTTTTGAAACTCTTTAAAGCAAAGGAT 2430
Query 2411 TC-TTCGAAGCATTTTTCTCCTGATGATGATGAGAAGTATGAATGGGTCCCTTTAACCGT 2469
|| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2431 TCATT-GAAGCATTTTTCTCCCGACAATGATGAGAAGTATGAATGGGTCCCTTTAACCGT 2489
Query 2470 GGAGTTTGGGCTTCCACTTTTCAGTCCAAAGTTATGCAACAATATCTGCAAAAGGATCGT 2529
||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2490 GGAATTTGGGTTTCCACTTTTTAGTCCAAAGTTATGCAACAATATCTGCAAAAGGATTGT 2549
Query 2530 CTCATCACAGTTACTTCAAGCAGATTCGCTCATGGAACAACACGATGCAATGCAATGTAT 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2550 CTCATCACAGTTACTTCAAGCAGATTCGCTCATGGAACAACACGATGCAATGCAATGTAT 2609
Query 2590 AAGGAAAAGGTTGAAAGATATATGTGCACTGTACCAAGCAACAGGTCCAGCTGCTAAAGT 2649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2610 AAGGAAAAGGTTGAAAGATATATGTGCACTGTACCAAGCAACAGGTCCAGCTGCTAAACT 2669
Query 2650 TCTTTACCAGAAAGAACAAGTAAAGGAGCCTACCCGTAGTAATAAGCTCATGAACTACGC 2709
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 2670 TCTTTACCAGAAAGAACAAGCAAAGGAGCCTACACGTACTAATAAGCTCATGAACTACGC 2729
Query 2710 AAGTGGAAGGTGGAACCCACTCGTGGACCCTTCCTCACCAATTTCAGGAGCCACAAGTGA 2769
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 2730 AAGTGGAAGGTGGAACCCACTTGTTGACCCGTCCTCACCAATTTCAGGAGCCACAAGCGA 2789
Query 2770 ATTTCAAAGGCTGAAACTAGCTAATCGCCAGCGTTGCCGGACTGAAGTTCTGAGCTTCGA 2829
||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2790 ATTCCAACGGCTGAAACTAGCTAATCGCCAACGTTGCCGGACTGAAGTTCTGAGCTTCGA 2849
Query 2830 TGGTAGCATCCTTAGATCCTACACCCTGGCACCAGTGT-TCGAGGCCT-CCACAAGGAGC 2887
||||||||||||||||||||||||| |||||||||| | | ||||| | |||||||||||
Sbjct 2850 TGGTAGCATCCTTAGATCCTACACCTTGGCACCAGTATAT-GAGGC-TGCCACAAGGAGC 2907
Query 2888 ATTGATGAGAATGCTCCTTTAAGTACAACAAAAGCAGATGCTGATGAAGCAGATAGCCGA 2947
|||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2908 ATTGATGAGAATGCACCTTTAAGTACAACAAAATCAGATTCTGATGAAGCAGATAGCCGA 2967
Query 2948 GAAGTGATTCTTCCAGGACTGAATCTTCTCTATGATGGTTCAGAGTTGCACCCTTTTGAT 3007
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2968 GAAGTGATTCTTCCAGGACTAAATCTTCTCTATGATGGTTCAGAGTTGCACCCTTTTGAT 3027
Query 3008 ATTGGCGCTTGCCTTCAGGCTCGTCAACCAGTTGCTCTCATAGCAGAAGCTGCTGCCGCG 3067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3028 ATTGGCGCTTGCCTTCAGGCTCGTCAACCAGTTGCTCTCATAGCAGAAGCTGCTGCCGCG 3087
Query 3068 TCTGCATCCCTCGCCCCGAAGTAGACTAGTACTCAAAAAGATTCTAATCTTG-TAAAAGG 3126
||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 3088 TCTGCATCCCTCGCCCCAAAGTAGACTAGTACTCAAAAAGATTCTAATCCAGATTTCAT- 3146
Query 3127 TACAGATGTATTTGCAGGTCGGGTTCTTGTTTGTTTGTTTTACATTCTGGCCGACTGGAA 3186
| || || | | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3147 TGCACATCAAGTAAAAGGTCGGGTTCTTGTTTGTTTGTCTTACATTCTGGCCGACTGGAA 3206
Query 3187 AATGCATCCGCGGCGACCATCAAACCAAACTGATGTTGC-TTATACCTAGCAAAGCATTA 3245
|| ||||||||| |||||||| |||||||||||| ||| ||||||||||||| ||||||
Sbjct 3207 AA--CATCCGCGGTGACCATCAGACCAAACTGATGCTGCCTTATACCTAGCAAGGCATTA 3264
Query 3246 GGACTTTTACAA-TTTATACATTTGG-C--T------AACGAATGAATGAATGTATCCTT 3295
||| |||||||| ||| ||||||||| | | ||||| |||||||||||||||||
Sbjct 3265 GGAGTTTTACAAATTTCTACATTTGGGCCATTTGGCTAACGAGTGAATGAATGTATCCTT 3324
Query 3296 AATACCATTTGTG--CTTCGCTTGAAAGTTTTTTGGAGACTGTGTAGTGTCAACTGTCAA 3353
| ||||||||||| |||||||||||| ||||||||||||||| | | ||||||
Sbjct 3325 A-TACCATTTGTGTGCTTCGCTTGAAACTTTTTTGGAGACTGT--A-----A--TGTCAA 3374
Query 3354 GGAAGGCTGTGGTTTATAGAGGAGTT 3379
|||||| ||||||| |||||||||||
Sbjct 3375 GGAAGGTTGTGGTTAATAGAGGAGTT 3400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169564267340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5