BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473665
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35230.1 | Symbols: AGP5 | arabinogalactan protein 5 | chr1:... 710 0.0
> AT1G35230.1 | Symbols: AGP5 | arabinogalactan protein 5 | chr1:12917149-12917763
FORWARD LENGTH=615
Length=615
Score = 710 bits (384), Expect = 0.0
Identities = 522/587 (89%), Gaps = 15/587 (3%)
Strand=Plus/Plus
Query 1 TAACAATGGCCTCAAAATCCGTCGTCGTTTTCCTCTTCCTCGCTCTTGTGGCCTCCTCCG 60
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 31 TAACAATGGCCTCCAAATCCGTCGTCGTTTTCCTCTTCCTCGCTCTCGTGGCTTCCTCTG 90
Query 61 TCGTTGCTCAAGCTCCGGGACCAGCTCCAACCATATCTCCCCTCCCAGCTACTCCTCCAC 120
|||||||||||||||| ||||||||||| |||||||||||| | ||||| |||||| |||
Sbjct 91 TCGTTGCTCAAGCTCCCGGACCAGCTCCGACCATATCTCCCTTGCCAGCCACTCCTACAC 150
Query 121 CGTCTCAATCTCCTAGAGCCACCACACCGGCACCATCACCCTCAGCCAATCCTCCTTCCT 180
|||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||
Sbjct 151 CGTCTCAATCGCCTAGAGCCACCGCACCGGCACCTTCACCATCAGCCAATCCTCCTCCCT 210
Query 181 CAGCTCCTACCACCGCTCCTCCGGTTAGTCAGCCGCCGACTGAATCTCCGCCAGCTCCTC 240
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 211 CAGCTCCTACCACTGCTCCTCCGGTTAGTCAGCCGCCTACTGAATCTCCACCAGCTCCTC 270
Query 241 CGACGTCTACTACCCC-TGCAGGATCTCCTGGCACAACTGTTCCCTCTGGTGAAGCTGGA 299
||||||||||| |||| | | ||| |||| ||||||| |||||| ||||| |||||||||
Sbjct 271 CGACGTCTACTTCCCCAT-CCGGAGCTCCGGGCACAAATGTTCCGTCTGGAGAAGCTGGA 329
Query 300 CCTGCTCAGTCTCCCCCAAGTGGCTCTCCTAACGCCGCTTCAGTGAGCAGAGTTTCCATC 359
|||||||||||||||| |||||||||||| ||||| ||| |||| |||||||| ||| ||
Sbjct 330 CCTGCTCAGTCTCCCCTAAGTGGCTCTCCAAACGCAGCTGCAGTTAGCAGAGTCTCCCTC 389
Query 360 GTCGGAACTTTCGCCGGAGTCGCCGTGATCGGCGCTTTTTTGCTGTAGATACTTTTGACC 419
|||||||||||||||||||| |||||||||| |||||| |||||||||| || ||||||
Sbjct 390 GTCGGAACTTTCGCCGGAGTGGCCGTGATCGCCGCTTTGTTGCTGTAGAGGCTATTGACC 449
Query 420 CATTGAATAGATTCACTAGGAATTATTTTTGGGTTCATTATTTGTCATTTTGTTACTATT 479
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 450 CATCGAATAGATTCACTAGGAATTATTTTTGGGTTCATTGTTTGTCCTTTTGTTACTATT 509
Query 480 TAATTA---A-TT-AT-GTAATTTATA-G-TGTTTTAT-AT-GATGCT-TTGTTGGTTTT 528
|||||| | || || || |||||| | || ||||| || | || | |||||||| ||
Sbjct 510 TAATTATGTAGTTTATAGTGTTTTATATGATGCTTTATTATCG-TGTTATTGTTGGTGTT 568
Query 529 ATATTTGTTACAAGTTCTT-ATAATTTCCTTGATTATTAGCATTCTT 574
||||||||||||| || || ||| |||||||||||||| ||||||||
Sbjct 569 ATATTTGTTACAATTTTTTTATAGTTTCCTTGATTATTGGCATTCTT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5