BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473666
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35260.1 | Symbols: MLP165 | MLP-like protein 165 | chr1:129... 787 0.0
AT1G35310.1 | Symbols: MLP168 | MLP-like protein 168 | chr1:129... 544 5e-154
> AT1G35260.1 | Symbols: MLP165 | MLP-like protein 165 | chr1:12936849-12937787
REVERSE LENGTH=767
Length=767
Score = 787 bits (426), Expect = 0.0
Identities = 482/510 (95%), Gaps = 0/510 (0%)
Strand=Plus/Plus
Query 54 AAAAAATGGTAGAAGAGGAGATTGAGGTAGATGTCGATATCAAAACTACGGCTGATAAGT 113
|||| ||| |||||||||||||||||||||| |||||||| ||||| | |||||| ||||
Sbjct 94 AAAACATGATAGAAGAGGAGATTGAGGTAGACGTCGATATTAAAACCAGGGCTGACAAGT 153
Query 114 TCCACATGTTCATCAGAAGATCACAACATGTTCCTAAAGCCACTCGCTACATTAAGGGAT 173
|||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 154 TCCACAAGTTCATCAGAAGATCACAACATGTGCCCAAAGCCACTCACTACATTAAGGGAT 213
Query 174 GTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAATTAGTTT 233
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 214 GTGATCTGCTCGAAGGCGAGTGGGGAAAAGTTGGAAGCATACTCTTGTGGAAATTAGTTT 273
Query 234 TTGATGGAGAGCCAAGAGTGTCAAAGGATATGATCGAGGTGATGGATGTGGAGAAGAATG 293
|||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 274 TTGATGGAGAGCCACGAGTGTCAAAGGATATGATCGAGGTAATAGATGAGGAGAAGAATG 333
Query 294 TGATTCAGTTGAGGGTGTTAGAGGGACCTCTGATGAAAGAGTACAAGAGCTTCCTGAAAA 353
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 334 TGATTCAGTTGAGGGTGTTAGAGGGACCTCTGAAGAAAGAATACAAGAGCTTCCTGAAAA 393
Query 354 CGATGAAAGTAATGAGCCCTAAGCATGGAGGGTCCGGAAGTGTGGTGAAGTGGAACATGA 413
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 394 CGATGAAAGTGATGAGCCCTAAGCATGGAGGGCCCGGAAGTGTGGTGAAGTGGAACATGA 453
Query 414 AGTATGAGAGGATTGATCAGAAGGTGGATCACCCAAAGAGGCTTCTCCAGTTCTTCGTCG 473
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 454 AATATGAGAGGATTGATCAGAACGTGGATCACCCAAACAGGCTTCTCCAGTTCTTCGTCG 513
Query 474 AAGTGACTAAAGAGATTGACCAATACCTCTTGTCTAATGATTAATTAGGGGACTCTTCTG 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 514 AAGTGACTAAAGAGATTGACCAATACCTCTTGTCTAAGGATTAATTAGGGGACAGTTCTG 573
Query 534 CTTGGCTTCTGTGTGGGAGAGTTTTGTATG 563
|||||||| |||||||||||||||||||||
Sbjct 574 CTTGGCTTATGTGTGGGAGAGTTTTGTATG 603
> AT1G35310.1 | Symbols: MLP168 | MLP-like protein 168 | chr1:12956159-12957090
REVERSE LENGTH=791
Length=791
Score = 544 bits (294), Expect = 5e-154
Identities = 448/519 (86%), Gaps = 23/519 (4%)
Strand=Plus/Plus
Query 53 TAAAAAATGGTAGAAG-AGGAGATTGAGGTAGATGTCGATATCAAAACTACGGCTGATAA 111
|||||||||||||| | | ||| |||| |||||||| || |||||| |||||||||||||
Sbjct 61 TAAAAAATGGTAGAGGCA-GAGGTTGAAGTAGATGTGGAAATCAAATCTACGGCTGATAA 119
Query 112 GTTCCACATGTTCATC-AGAAGATCACAACATG-TTCCTAAAGCCACTCGCTACAT-TA- 167
||| ||||||| || |||||||||||||||| ||| ||||||||||||| || ||
Sbjct 120 GTTTTTCATGTTC-TCTAGAAGATCACAACATGCCTCC-AAAGCCACTCGCT--ATGTAC 175
Query 168 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAAT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGAAAT 235
Query 228 TAGTTTTTGATGGAGAGCCAAGAGTGTCAAAGGATATGATCGAGGTGATGGATGTGGAGA 287
|| | ||||||||||||||| |||||||||||||||||| |||| ||| ||| || |||
Sbjct 236 TAACTGTTGATGGAGAGCCAAAAGTGTCAAAGGATATGATTGAGGCGATTGATATGAAGA 295
Query 288 AGAATGTGATTCAGTTGAGGGTGTTAGAGGGACCTCTGATGAAAGAGTACAAGAGCTTC- 346
|||| |||| |||| ||||||||||||||||||||||| | |||||||||| | |||
Sbjct 296 TGAATATGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGGAAGAGTACAATATTTTCT 355
Query 347 CTGAAAACGATGAAAGTAATGAGCCCTAAGCATGGAGGGTCCGGAAGTGTGGTGAAGTGG 406
| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||
Sbjct 356 C-GAAAACGATGAAAGTAA-G--CCCTAAGCAAGGAGGGTCTGGAAGTGTGGTGAAGTGG 411
Query 407 AACATGAAGTATGAGAGGATTGATCAGAAGGTGGATCACCCAAAGAGGCTTCTCCAGTTC 466
||| ||||||||||||| |||||| ||||||||| ||||| | ||||||| || ||||||
Sbjct 412 AACTTGAAGTATGAGAGAATTGATGAGAAGGTGGCTCACCTAGAGAGGCTCCTTCAGTTC 471
Query 467 TTCGTCGAA-GTGACTAAAGAGATTGACCAATACCTCTTGTCTAATGATTAATTAGGGGA 525
||||||||| ||| ||| ||||||||||||||||| |||||| | | ||| ||| |
Sbjct 472 TTCGTCGAATGTGT-TAACGAGATTGACCAATACCTATTGTCTGAGGGTTA----GGG-A 525
Query 526 CTCTTCTGCTTGGCTTCTGTGTGGGAGAGTT-TTGTATG 563
|| |||| | |||||| |||||||||||||| |||||||
Sbjct 526 CTTTTCTCCCTGGCTTATGTGTGGGAGAGTTATTGTATG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5