BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473673
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35420.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1476 0.0
> AT1G35420.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:13026238-13027684 FORWARD LENGTH=1251
Length=1251
Score = 1476 bits (799), Expect = 0.0
Identities = 968/1047 (92%), Gaps = 22/1047 (2%)
Strand=Plus/Plus
Query 1 GGACCATATTGATTCTAGAAAGATACATACAATGGCTGCGTCGTTAGCCTCTCTTTCCTC 60
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 52 GGACCATATTGATTCTAGAAAGATACTTACAATGGCTGCATCGTTAGCCTCTCTTTCCTC 111
Query 61 CTTAGCTAAAGCCGGAGCACCACGGTCACTATTCAACCGCCATGGCAGCCACCGCCTTCC 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 112 CTTAGCTAAAGCCGGAGCACCACGGTCACTGTTCAACCGCCATGGCAGCCACCGCCTTCC 171
Query 121 TCCTCCGCGAATCCCT-CCTCTTGCTT-C-C--TC--------T--G-TCAAGAAACATA 164
|||||| | ||| | | |||||||||| | | || | | ||||||||||||
Sbjct 172 TCCTCCACAAAT-CATACCTCTTGCTTCCTCTATCATGTTTTGTCAGATCAAGAAACATA 230
Query 165 TCACGACAAGCTTCTCGCGGACACAAAGGTCTATGAAGAACATTTCTGCCCTCGAGACCT 224
||||||| ||||||| ||| | ||| ||| |||||||||||| ||||||||||||||
Sbjct 231 TCACGACGAGCTTCTATAGGAGAGGAAGTTCTCTGAAGAACATTTATGCCCTCGAGACCT 290
Query 225 CTGACGGCACCGTTAACGTGGAGGTTGACGATGGTGATGAGGAAGAAGAAGCGTGTGAGC 284
|||||||| || |||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 291 CTGACGGCGCCATTAACGTGGAGG-T--CGATGATGATGAGGAAGAAGAAGCGTGTGAGC 347
Query 285 TTGTTAACGGAACAGAAGTGTCTGTTGATGGTGTTGAAGGTTATCTTTTAACGGCGGTAA 344
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 348 TTGTTAACGGAACAGAAGTGTCCGTTGACGGTGTTGAAGGTTATCTTTTAACGGCGGTGA 407
Query 345 AGAACAATAACGGAACTGGATTGCTTCTTCTCTCTGATGTCTTTGGATTTCAAGATTCAG 404
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 408 AGAACAATAACGGAACTGGATTGCTTCTACTCTCTGATGTCTTTGGCTTTCAAGATTCAG 467
Query 405 CCACACGCGATTTCGCTTACCGTGTCGCTTGCAATGGCTACAATGTTCTTGTCCCGGACT 464
| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 468 CTACACGCGATTTCGCTTACCGTGTGGCTTGCAATGGCTATAACGTTCTTGTCCCGGACT 527
Query 465 TATTTCGTGGAGATCCATGGTCGGAAAACCGACCAAAGTCCGAATTCGAGGAATGGAGAA 524
| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 528 TGTTTCGTGGAGATCCATGGTCGAAAAACCGACCAAAGTCCGAATACGAGGAATGGAGAA 587
Query 525 GAGGACACGACCCGAACCGTATCAGACAAGACACTACTAGCTTCACAAAATGGATGGTTG 584
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 588 GAGGACATGACCCTAACCGTATCAGACAAGACACTACTACCTTCACAAAATGGATGGTTG 647
Query 585 AGGAATTTGCAGCGGCTGGGATCTCCAAGAAGCTAGGAGTAATGGGGTTCTGTTTCGGTG 644
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct 648 AGGAATTTGCAGCGGCTGGAATCTCCAAGAAGCTAGGAGTGATGGGGTTCTGTTTTGGCG 707
Query 645 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAATGGTTACTTCAGCACCGGTGTCT 704
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 708 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAGCGGTTACTTTAGCACCGGTGTCT 767
Query 705 CGTTCTATGGTACGCGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 764
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CGTTCTACGGTACGAGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 827
Query 765 TTATTGCTGGAGACAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTACGAAGTTGAGGAGA 824
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 828 TTATTGCTGGAGATAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTATGAAATTGAGGAGA 887
Query 825 AGATTGGTGAAAGGA-CAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGTTTTGTTCAC 883
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 888 AGATTGGTGAA-GGTTCAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGCTTTGTTCAC 946
Query 884 CGGCCGGAGACACCGGAAGATGATAGAGACGCGGAGGAGGCGTTTGCTCTTATGAGGAAT 943
||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||| |||
Sbjct 947 CGGCCCGAGACACCCGAAGATGATCGAGACGCTGAGGAAGCGTTTGCTCTCATGAGAAAT 1006
Query 944 TGGTTACATCATCATTTGATTTGAAACCAATTATTTTTCTCTACTCTTTGTACATCCAAG 1003
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1007 TGGTTACATCATCATTTGATTTGAAGCCAATTGTTTTTCTCTACTCTTTGTACATCCAAG 1066
Query 1004 TTAAAATAAAACTCGGATTCTAGTAAA 1030
|||||||||||||||||||||||||||
Sbjct 1067 TTAAAATAAAACTCGGATTCTAGTAAA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5