BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473674

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   564    3e-160


> AT1G35430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G09170.1); 
Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13030553-13031152 
REVERSE LENGTH=600
Length=600

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 390/429 (91%), Gaps = 13/429 (3%)
 Strand=Plus/Plus

Query  43   CCATTTAATCCGGCCATGACTCTTCACGCGCCGTCGTCGTCATTATGTTGACCGACGTCT  102
            ||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  78   CCATTTACTCCAGCCATGACTCTTCACGCGCCGTCGTCACCATTATGTTGACCGACGTCT  137

Query  103  TTTGGCTTCGTACACGACGGAGCCGCTTCATTTTCTTTCTCCTCTGTTCTCCATTACTAA  162
            ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  138  TTTGGCTTCGTACACGACGGAGCCGTTTCGTTTTCTTTCTCCTCTGTTCTCCATTACTAA  197

Query  163  TCCCAATCATCTGCGCCTCCATCCCAATTCTCTGCGCCGTCGAGATCTTTAGCCGCCTCC  222
            |||||||| |||| ||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct  198  TCCCAATCCTCTGTGCCTCAATCCCAATCCTCTGCGCCGTCGAGATCTTTAGTCGTCTCC  257

Query  223  GTAGTCGTCATCCTTGGTTTGCTAAATCCGCCGGCGATGAAGATGATTTGAGGCTCCGGA  282
            ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct  258  GTAGTCGTCATCCTTGGTTTGCTAAATCCACCGCCGAGGAAGATGATTTGAGGCTCCGGA  317

Query  283  AATGTGAAGAAGGTTGTGGTTGCGGCGGATTTGA--A-CCGGAAGAAGAAGCTGGATTGC  339
             |||||||||||| |||||||||||||| |||||  | ||||||||||   |||| ||||
Sbjct  318  GATGTGAAGAAGGATGTGGTTGCGGCGGGTTTGATGAACCGGAAGAAG---CTGGTTTGC  374

Query  340  TTCAGAGATACTTGGAAGATCAGTTGATTTTGGTTAGATCTGTTTATGATTGCGGTGAAG  399
            |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct  375  TTCAGAGATACTTGGAAGATCAGTTGGTTTTGGTTAGATCTGTTTATGATTGTGGTGAAG  434

Query  400  AAGATCAAGATCGTGATCGTGATCTTGATTCCGATCAAATTGTTAGGGTTCCTCTTCTTT  459
            ||||||||||||  ||||   |    ||||||||||||||| |||| |||||||||||||
Sbjct  435  AAGATCAAGATCAAGATCA--A----GATTCCGATCAAATTATTAGAGTTCCTCTTCTTT  488

Query  460  CGTAA-TTT  467
            ||||| |||
Sbjct  489  CGTAAATTT  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5