BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473675
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35440.1 | Symbols: CYCT1;1 | cyclin T1;1 | chr1:13035294-13... 989 0.0
> AT1G35440.1 | Symbols: CYCT1;1 | cyclin T1;1 | chr1:13035294-13036037
REVERSE LENGTH=744
Length=744
Score = 989 bits (535), Expect = 0.0
Identities = 667/731 (91%), Gaps = 7/731 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAAAC---AAAGTGGTATTACACAAGAGAAGAGATTGAAAAAATCTCTCCATCG 57
||||||||||| ||| |||||| |||||||||||| ||| ||||||| ||||||||||
Sbjct 1 ATGGCAGAAACAAAAAACTGGTATAACACAAGAGAAGCGATAGAAAAAACCTCTCCATCG 60
Query 58 AGACTTGACGGTATCAACTTTAAA-GAAGAGACTTTCCAACGTTGGTCTTACACTTCATT 116
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 AGACTTGACGGTATCAAC-TTAAAGGAAGAGACGTTCCAACGTTGGTCTTACACTTCATT 119
Query 117 CCTTCAAGAGCTTGGCCAGAGACTAAACAATCCTCAGAAATCTATAGCCACAT-CGATTG 175
||| |||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||
Sbjct 120 CCTACAAGAGCTTGGCCAGAGACTAAACAATCCTCAAAAAACTATAGCCAC-TGCGATTG 178
Query 176 TCTTGTGTCAACGATTCTTCACTCGTCAATCACTTGCAAAGAACGACCCAAAAACAGTAG 235
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 179 TCTTGTGTCAACGATTCTTCACTCGTCAATCACTCACAAAGAACGACCCGAAAACAGTCG 238
Query 236 CCATCATCTGTATGTTTATCGCTGGAAAAGTCGAAGGGTCTCCAAAGCCGGCCGGTGACG 295
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 239 CCATCATCTGTATGTTTATAGCCGGAAAAGTCGAAGGGTCTCCAAGGCCGGCCGGTGACG 298
Query 296 TCATCGTTGTCTCTTACCGAGTTTTACACAATAAAGAGCCGTTGAGAGATGTGTTCGAGG 355
|| || ||||||| ||| | |||||| |||||| |||||||||||||| |||||||||
Sbjct 299 TCGTCTTTGTCTCGTACAGGGTTTTATTCAATAAGGAGCCGTTGAGAGACGTGTTCGAGA 358
Query 356 GATTGAAGAAGACTGTGTTAACCGGAGAGAAGCTTGTGCTCTCTACGTTAGGATTTGATC 415
||||||||| ||||||||||||||| |||||||||||||||||||| |||| || |||||
Sbjct 359 GATTGAAGATGACTGTGTTAACCGGTGAGAAGCTTGTGCTCTCTACTTTAGAATGTGATC 418
Query 416 TCGAAATCGAACACCCTTATAAACTAGTGATGGATTGGGTTAAAAGATCGGTTAAGGCCG 475
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 419 TTGAAATCGAACACCCTTATAAACTAGTGATGGATTGGGTTAAGAGATCGGTTAAGACCG 478
Query 476 AGGATGTTAGGCGGTTATGTCAAGCTGCATTTAATTTCATTAATGACAGTCTAAGGACGT 535
|||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 479 AGGATGGTAGGCGGTTATGTCAGGCTGCATTTAATTTCGTTAATGACAGTCTGAGGACGT 538
Query 536 CGCTTTGCTTACAGTTCGGGCCTAGTCAGATTGCAGCCGCTGCTATATATATCGGTTCGT 595
|||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||| |
Sbjct 539 CGCTTTGCTTGCAGTTTGGGCCTAGTCAGATCGCATCGGCTGCTATATATATCGGTTTGA 598
Query 596 TCATGTGTAAGATGACGTTACCGGGTGATGGAGAGAAAGTGTGGTGGCGAGAGTTCGATG 655
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||
Sbjct 599 GCATGTGTAAGATGACGTTACCGTGTGATGGAGATAAAGCGTGGTGGCGAGAGTTTGATG 658
Query 656 TCACGAAGCGTCAATTGTGGGAAATTTGTGACCAGACGCTTAATCTTTATATTCAGGACT 715
||||||| |||||||||||||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 659 TCACGAAACGTCAATTGTGGGAGATTTGTGACCAGATGCTTGATCTTTATGTTCAGGACT 718
Query 716 TCGTCATTCCG 726
|||| |||||
Sbjct 719 TCGTTGTTCCG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5