BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473679
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35490.1 | Symbols: | bZIP family transcription factor | ch... 1770 0.0
> AT1G35490.1 | Symbols: | bZIP family transcription factor |
chr1:13061638-13063450 FORWARD LENGTH=1312
Length=1312
Score = 1770 bits (958), Expect = 0.0
Identities = 1223/1340 (91%), Gaps = 62/1340 (5%)
Strand=Plus/Plus
Query 1 GGTGATTGAAACCAACCACACGGGAGGAGATTATGCCATTTTCCTCCTCGTGGAAGGTCT 60
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 18 GGTGATCGAAACCAACCACACGGGAGGAGCTTATGCCATTTTCCTCCCCGTGGAAGGTCT 77
Query 61 AATAATCACACGTCTCCTAATTTGCTCAG-AC--CTTC-TAGGTTTTGAAGAATGGAAGA 116
|| ||||||||||||||||| | ||| | || |||| ||||||||||||||||||| |
Sbjct 78 AACAATCACACGTCTCCTAA--T-CTC-GTACGTCTTCTTAGGTTTTGAAGAATGGAAAA 133
Query 117 TTTAAACAGGTTGTCAAACCCGGGAAATTTCGGATTCATTGGAAG---ACAATCACGAAT 173
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 134 TTTAAGGAGGTTGTCAAACCCGGGAAATTTCGGATTCATTGGAAGATCACAATCACGAGT 193
Query 174 TCCCCaaaaaaaCATGGAAAATAATATTTCTCCTCCTAATAATATGCACCACCATAGTGC 233
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 194 TCCCCAAAAAAACATGGAAAATAACATTTCTCCTCCTAATAATATGCACCACCATAGTGC 253
Query 234 TTCTTTAGATGATCTTCTCACAGAAGACCAACCAGCTTGGCTAGATGAGCTCCTAAGTGA 293
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 254 TTCTTTAGATGATCTTTTCACAGAAGACCAACCAGCTTGGCTCGATGAGCTCCTAAGTGA 313
Query 294 GCCAGCTTCACCTAAGATTAACAAAGGTCATAGACGTTCAGCTAGTGACACAGCTGCTTA 353
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GCCAGCATCACCTAAGATTAACAAAGGTCATAGACGTTCAGCTAGTGACACAGCTGCTTA 373
Query 354 CTTGAACTCAGCTTTAATGCCTTCAATGGAAGATCAGCTTATGAAAAATCATGTTTCTGG 413
|||||||||||||||||||||||| || || | ||||||||||| ||||
Sbjct 374 CTTGAACTCAGCTTTAATGCCTTC-------GA--AG-----G-AAAATCATGTTGCTGG 418
Query 414 TTCTTTTTGGCAATTCCAGAACTATGATTTGTGGCAGTCCAACTCTTATGAACAACACAA 473
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCGTCTTGGCAGTTCCAGAACTATGATTTGTGGCAGTCCAACTCTTATGAACAACACAA 478
Query 474 TAAATTAGGATGGGATTTGTCTACCGCAAATGGAACTAATCTCCAAAGAAATATGTCATG 533
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 479 TAAATTAGGATGGGATTTCTCTACAGCAAATGGAACTAATATCCAAAGAAATATGTCATG 538
Query 534 TGGAGCTGTAAATAGATTAGGTACCTCAACATCGAAATCCATTGAGAAACATGTAAGCAA 593
|||||| ||||| | | | | | |||||| ||||||||||||||||||||||
Sbjct 539 CGGAGCTTTAAAT--A-T--G----T---CGTCGAAACCCATTGAGAAACATGTAAGCAA 586
Query 594 AATGAAAGAAGGAACTTCCACAAAACCAGATGGTCCTGGATCAAAGACTGACTCGAAACG 653
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 587 AATGAAAGAAGGAACTTCTACAAAACCAGATGGTCCTAGATCAAAGACTGACTCAAAACG 646
Query 654 TATCAAACATCAAAATGCTCATCGGGCACGTCTAAGAAGGCTTGAGTACATATCAGACCT 713
|||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 647 TATCAAACATCAAAATGCTCATCGAGCGCGTTTGAGAAGGCTTGAGTACATATCAGACCT 706
Query 714 TGAAAGGACCATCCAAGTGCTACAAGTTGAAGGATGTGAAATGTCATCTGCCATTCACTA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TGAAAGGACCATCCAAGTGCTACAAGTTGAAGGATGTGAAATGTCATCTGCCATTCACTA 766
Query 774 CTTGGATCAGCAGTTACTCATGCTTAGCATGGAAAATAGAGCTTTAAAACAACGTATGGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTTGGATCAGCAGTTACTCATGCTTAGCATGGAAAATAGAGCTTTAAAACAACGTATGGA 826
Query 834 TAGTTTAGCAGAAATCCAAAAGCTTAAACATGTGGAGCAGCAATTGCTTGAGAGAGAGAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TAGTTTAGCAGAAATCCAAAAGCTTAAACATGTGGAGCAGCAATTGCTTGAGAGAGAGAT 886
Query 894 AGGAAATCTACAGTTTCGAAGacaccaccaacaacaaccacaacagaaccaaaaacaagt 953
|||||| |||||||||||| ||||||| | ||||||||||| || ||||||||||||||
Sbjct 887 AGGAAACCTACAGTTTCGACGACACCA--A-CAACAACCACAGCAAAACCAAAAACAAGT 943
Query 954 gcaagcaatacaacaaaatcgatacaacaaatatcaacCACCTGTTACACAAGAACCAGA 1013
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 944 CCAAGCAATACAA-AA--TCGATACAACAAATATCAACCACCTGTTACACAAGAACCCGA 1000
Query 1014 CT-CCCAATTTGCAGCCTTGGCAATATGATTTAGGAAATATGGATCCATTACAATTCAGA 1072
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1001 -TGCCCAATTTGCAGCCTTGGCAATATGATTTAGGAAATATGGATACATTG---TTCAGA 1056
Query 1073 TTATGCTGAGCTCTTCTTGCTCTATCTTAATGTCCATACAACATAGGTGAACTATTGATG 1132
||| ||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1057 TTAAGCTGAGCTCCTCTTGCTCTACCTTAATGTCCATACAACATAGGTGAACT-T-GATG 1114
Query 1133 TTTGTATTCTTGAATGAATACCTAAAGAAA-CACCATTATGTACATCACAATGTGGTTGC 1191
|||||| |||||||||| ||||||| ||| || | ||||||| |||| |||||||||||
Sbjct 1115 TTTGTAGCCTTGAATGAAAACCTAAA-AAAGCATCGTTATGTAAATCAAAATGTGGTTGC 1173
Query 1192 CCATATCCCCCTCTATTGCATTTCTCT--ATTTATGGGATGGTAGAGAATCTATTGTCAA 1249
|||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1174 CCATATCCTCCTCTATTGCATTTCTCTCTATTTATGGCATGGTAGAGAATCTCTTGTCAA 1233
Query 1250 GAAACAACTTCTTTCATGTTATGTCATAATTTGTAATTCTTCTTATTTCATCTATTATAT 1309
||||| ||| ||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 1234 GAAAC---TTC----ATGTTATGTAATAACTTGTAATCCTTCTTATTTCATCTATTATAT 1286
Query 1310 ATATGAATAAATAATTTTTT 1329
|||||||||| |||||||||
Sbjct 1287 ATATGAATAAGTAATTTTTT 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5