BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473680
Length=2218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35510.1 | Symbols: | O-fucosyltransferase family protein |... 3217 0.0
> AT1G35510.1 | Symbols: | O-fucosyltransferase family protein
| chr1:13071165-13074949 FORWARD LENGTH=2302
Length=2302
Score = 3217 bits (1742), Expect = 0.0
Identities = 2013/2140 (94%), Gaps = 33/2140 (2%)
Strand=Plus/Plus
Query 20 TCTCTCTCGGCATTACTGCTTTCTTCACGTGATTACGTTAATTTTACTCGAAAAG-CTCA 78
||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 42 TCTCTCTCGCCATCACTGCTTTCTTCACGTGATTACGTTAA-TTTACTCGAAAAGACTC- 99
Query 79 AAAAACTTT-C-TCTCTTTCTC--TCATTTTC-CGGGAAAATTCTCC-AC-CA--ttttt 129
||||||||| | |||||||||| |||||||| |||||||||||||| || | |||||
Sbjct 100 AAAAACTTTCCTTCTCTTTCTCTTTCATTTTCTCGGGAAAATTCTCCAACGAAGCTTTTT 159
Query 130 tttCCTTCTTCTCTAAATTAAATTTT-G--TG-A-Caaaaaa-aaaaaaaaaTTCGTTCA 183
||| |||||||||||||||||||||| | || | ||||||| |||| |||||||||||
Sbjct 160 TTTGCTTCTTCTCTAAATTAAATTTTGGACTGAAGCAAAAAAGAAAATTAAATTCGTTCA 219
Query 184 TACTCTACAACAAAGCTTACCACACGATGCTACTACTACTACCTTCTCTTTCCAAATCAA 243
||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 220 TACTCTACAACGAAGCTTACCACACAATGCTTCTTCTACTACCTTCTCTTTCCAAATCCA 279
Query 244 TCTCCGTGTTTTTCTAGGGTTTA-CCTCAATCGATTTCAGATCATGCACGGCCTTAGCCG 302
||||||| || |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 280 TCTCCGTCTTGTTCTAGGGTTTATCC-CAATCGATTTCAGATCATGCACGGCCTTAGCCG 338
Query 303 TCTAGGTAACGGCAATAGCAACGGTCGAATCAATCTTTCATCACCATCACCGCCTTCTTC 362
|||||||||||||| |||||||||| |||||||| || | ||||| ||||| ||||||||
Sbjct 339 TCTAGGTAACGGCAGTAGCAACGGTAGAATCAATATTCCGTCACCGTCACCACCTTCTTC 398
Query 363 GCCTCGGATTCGTCACAGTAGAGGAAAATCACTCGCCGGAGGAGGAGTTTATAAGCAGGG 422
||||||||||||||| | ||||||||||| |||||| ||||| ||||||||||| ||
Sbjct 399 GCCTCGGATTCGTCATACCAGAGGAAAATCTCTCGCC---GGAGGTGTTTATAAGCAAGG 455
Query 423 ATTAGGAGAGAGACTTGTGTTTTTACTCTTTTCGATAGTTTTTAGAAGGAAAGGTGTCTT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ATTAGGAGAGAGACTTGTGTTTTTACTCTTTTCGATAGTTTTTAGAAGGAAAGGTGTCTT 515
Query 483 GTTGTTAGCGCCGCTTCTCTATATCGCTGGAATGTTACTGTTTATGGGATCTTTTGGATT 542
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 516 GTTGTTAGCGCCGCTTCTCTATATCGCTGGAATGTTACTATTTATGGGATCTTTTGGATT 575
Query 543 CACTGTGTTGGATCTAGGTCATGGTGTTGAGATTGTTTATAGAGGTGGTCCTCCTGGTTC 602
|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||
Sbjct 576 CACTGTGTTGGATCTAGGTCATGGTGTTGAGATTGTGTATAGACGTGGTTCTCCTGGTTC 635
Query 603 GGTGTATCGGAGTCCTAAGGTTTTTAAACGGCTTTGGCCGTTGATGGAGGCTGATGTTAA 662
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 636 GGTATATCGGAGTCCTAAGGTTTTTAAACGGCTTTGGCCGGTGATGGAAGCTGATGTTAA 695
Query 663 TGGAACTAGTCATAATGTGTTGATGCAAGTATGGAAGCCAAGAGTTAAAAGTATATGGAA 722
||||| ||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||
Sbjct 696 TGGAAGTAGTCATAATGTGTTGATGGAAGCATGGAAGCCTAGAGTTAAAAGTGTATGGAA 755
Query 723 ACCGTGTATTAGTACTAATGTTTCTGCTGCGGGATCGAATTCGAATGGTTATTTTATTAT 782
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 756 GCCGTGTATTAGTACTAATGTTTCTGCTGCTGGATCGAATTCGAATGGTTATTTCATTAT 815
Query 783 TGAAGCGAATGGCGGATTGAATCAACAACGCTTGTCAATATGTGATGCAGTTGCTGTGGC 842
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TGAAGCGAATGGTGGATTGAATCAACAACGCTTGTCAATATGTGATGCAGTTGCTGTGGC 875
Query 843 TGGATTGCTGAATGCTACTCTTGTCATCCCGATTTTTCACTTGAACAGTGTATGGCGTGA 902
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 876 TGGACTGCTGAATGCTACTCTTGTCATTCCGATTTTTCACTTAAACAGTGTATGGCGTGA 935
Query 903 TTCCAGCAAATTTGGCGATATATTTGATGAGGACTTCTTCATATATGCTCTTAGTAAGAA 962
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 936 TTCCAGCAAATTTGGTGATATATTTGATGAAGACTTCTTCATATATGCTCTTAGTAAGAA 995
Query 963 TGTGAATGTAGTGAAAGAGCTCCCAAAAGATATACTTGAGCGGTACAACTACAATATAAG 1022
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 996 TGTGAATGTTGTGAAAGAGCTCCCAAAAGATGTACTTGAGCGATATAACTACAATATAAG 1055
Query 1023 CAGTATTGTTAATTTGAGATTAAAAGCTTGGTCGAGTCCAGCATACTACCTCCAGAAGGT 1082
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1056 CAGTATTGTTAATTTGAGATTAAAAGCTTGGTCGAGTCCAGCGTACTATCTCCAGAAGGT 1115
Query 1083 GCTTCCACAACTTTTGCGTTTGGGGGCTGTCCGTGTTGCACCATTCTCCAACAGGTTGGC 1142
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1116 GCTTCCACAACTTTTGCGTTTGGGGGCTGTCCGTGTTGCACCATTTTCCAATAGGTTAGC 1175
Query 1143 TCATGCAGTTCCCGCACACATTCAAGGACTCAGATGCTTAGCAAACTTTGAAGCATTGAG 1202
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1176 TCATGCAGTTCCTGCACACATTCAAGGGCTCAGATGCTTAGCAAACTTTGAAGCATTGAG 1235
Query 1203 ATTTGCAGATCCCATACGGCTGCTTGCAGATAAAATGGTCAATAGGATGGTTACGAAGAG 1262
||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||
Sbjct 1236 ATTTGCAGAACCCATACGGCTTCTTGCAGAGAAAATGGTCGATAGGATGGTTACAAAGAG 1295
Query 1263 TGTTCAAAGCGGAGGAAAATATGTGTCTGTTCATCTCCGCTTTGAAATGGACATGGTTGC 1322
|||| | || |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1296 TGTTGAGAGTGGAGGAAAATATGTTTCTGTTCATCTCCGCTTTGAAATGGACATGGTCGC 1355
Query 1323 CTTCTCGTGTTGCGAATATGACTTTGGGAAGGCGGAGAAGCTAGAAATGGACATGGCCCG 1382
||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1356 CTTTTCGTGTTGCGAGTATGATTTTGGGCAGGCGGAGAAGCTAGAAATGGACATGGCCCG 1415
Query 1383 GGAAAGAGGGTGGAAAGGAAAGTTCAGGAGGAGAGGCAGAGTAATTAGGCCTGGTGCAAA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GGAAAGAGGGTGGAAAGGAAAGTTCAGGAGGAGAGGCAGAGTAATTAGGCCTGGTGCAAA 1475
Query 1443 CCGCATAGATGGAAAATGCCCTTTAACCCCACTCGAGGTCGGAATGATGCTTAGGGGCAT 1502
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1476 CCGCATAGATGGGAAATGCCCTTTAACCCCACTGGAGGTCGGAATGATGCTTAGGGGCAT 1535
Query 1503 GGGTTTTAACAATAGCACATTGGTTTACGTTGCTGCGGGAAACATTTACAAAGCTGACAA 1562
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1536 GGGATTTAACAATAGCACCTTGGTTTACGTAGCTGCGGGAAACATTTACAAAGCTGACAA 1595
Query 1563 ATATATGGCTCCTCTTAGGCAGATGTTTCCTCTTCTCCAAACCAAGGATACTCTAGCTAC 1622
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 ATATATGGCTCCTCTAAGGCAGATGTTTCCTCTTCTCCAAACCAAGGATACTCTAGCTAC 1655
Query 1623 TCCAGAGGAGCTTGCTCCGTTCAAGGGCCACTCATCAAGATTGGCTGCACTAGATTACAC 1682
||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1656 TCCAGAGGAGCTTGCTCCGTTTAAGGGACACTCATCAAGATTGGCAGCACTTGATTACAC 1715
Query 1683 AGTATGCCTCCACAGTGAAGTGTTTGTATCCACTCAAGGTGGAAACTTCCCTCATTTCTT 1742
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1716 AGTATGCCTCCACAGTGAAGTGTTTGTATCCACTCAAGGTGGAAACTTCCCACATTTCTT 1775
Query 1743 GATAGGTCATCGTCGTTACCTTTACAAAGGCCACGCGGAGACAATCAAACCCGATAAGCG 1802
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1776 GATAGGTCACCGTCGCTACCTTTACAAAGGCCACGCTGAGACAATCAAACCCGATAAGCG 1835
Query 1803 GAAACTAGTCCAGCTCTTAGATAAACCAAGCATTAGATGGGACTACTTCAAGAAACAAAT 1862
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1836 GAAACTAGTCCAGCTCTTAGATAAACCGAGCATTAGATGGGACTACTTCAAGAAACAAAT 1895
Query 1863 GCAAGATATGCTTAGACACAATGATGCAAAGGGAGTCGAATTAAGGAAACCCGCTGCATC 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 GCAAGATATGCTTAGACACAATGATGCAAAGGGAGTCGAATTAAGGAAACCCGCTGCATC 1955
Query 1923 ACTCTACACGTTTCCCATGCCCGATTGCATGTGTAAAGAACCTGATCCTGAACCTCAAAC 1982
|||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||||
Sbjct 1956 ACTCTACACGTTCCCCATGCCCGACTGCATGTGTAAAGAACCCGATCCGGAACCTGAAAC 2015
Query 1983 CGATCCAGCTTAAACCGGATTCCTGCTGTTCAGTGTT--TTAATTGTTTATGACTCCAAC 2040
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 2016 CGATCCAGCTTAAACCGGATTCCTGCTGTTCAGTGTTAATTA-TTGTTTATGACTTCAAC 2074
Query 2041 CATACATGTAACTTATCTATATAT--GTTGTATCATGA-TCCATGTATAAGCATTTTTTG 2097
|||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 2075 CATACATGTAACTTATCTATATATATGTTGTATCATGAGTCC-TGTATAAGCATTTTT-- 2131
Query 2098 CCCCT-CAAAAGTTTGGGGAATCTAAGATTAGTATTTTTT 2136
||||| |||||||| |||||||||||||||||||||||||
Sbjct 2132 CCCCTTCAAAAGTTGGGGGAATCTAAGATTAGTATTTTTT 2171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110039594640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5