BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473681
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35515.1 | Symbols: HOS10, MYB8 | high response to osmotic s... 760 0.0
AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 | ch... 449 1e-125
AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 | ch... 183 1e-45
> AT1G35515.1 | Symbols: HOS10, MYB8 | high response to osmotic
stress 10 | chr1:13077926-13080265 FORWARD LENGTH=639
Length=639
Score = 760 bits (411), Expect = 0.0
Identities = 547/611 (90%), Gaps = 15/611 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAAAGAA 60
Query 61 GAAGATCAACTTCTGATTGATTACATACGTACTAATGGTGAAGGCTCTTGGCGTTCTCTT 120
|||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 61 GAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTT 120
Query 121 CCTAAATCCGCCGGGTTGTTGCGGTGTGGAAAAAGTTGTAGATTAAGGTGGATTAATTAT 180
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 121 CCTAAATCCGTTGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGATTAATTAC 180
Query 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGATCAAATCATTGTTAAA 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGAGCAAATCATTGTCAAA 240
Query 241 CTTCATAGTTTATTCGGCAACAAATGGTCTTTGATAGCTGGGAAATTACCGGGAAGGACA 300
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 CTTCATAGTTTATTTGGCAACAAATGGTCTTTGATTGCTGGGAAATTACCGGGAAGAACC 300
Query 301 GATAATGAGATTAAAAACTATTGGAACACTCATATAAAGCGAAAGCTTCTTAGCCATGGC 360
||||||||||||||||| |||||||||||||||||||| | |||||||||| || |||
Sbjct 301 GATAATGAGATTAAAAATTATTGGAACACTCATATAAAAAGGAAGCTTCTTAACCGTGGT 360
Query 361 ATTGACCCAAAAACTCACCGTTCGATTAACGTATCC-AAAACGACACCGTTTCATACTCG 419
|||||||||||||||||| ||||||| | || | || ||||||||| |||||||| | ||
Sbjct 361 ATTGACCCAAAAACTCACGGTTCGATCATCG-AGCCTAAAACGACATCGTTTCATCCCCG 419
Query 420 AAACGAAGATGTGAAGTCCACGTTTCCTGATCTTAACGGTGTCATTAAATTAAAAACGGA 479
||| |||||| |||||||||||||||| | | | | ||| | ||| |||| | |||
Sbjct 420 AAATGAAGATTTGAAGTCCACGTTTCCCGGT-T---C--TGT--T-AAACTAAAGATGGA 470
Query 480 GACTTCATGTGAAAACGGTGCTTCAACGAGCGGTACGACTATAGACGAGGATCTACGGTT 539
|||||| ||||||||| ||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 471 GACTTCTTGTGAAAACTGTGCTTCTACGAGCGGTACGACTACGGACGAGGATTTACGGTT 530
Query 540 AAATGTTGAGTGTGATTACA-ATTATGATCA-CGTGGACAAGGAGCTAAACTTGGACCTA 597
|| |||||| |||||||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 531 AAGTGTTGATTGTGATTACAGAT-ATGATCATC-TGGACAAGGAGCTAAACTTGGACCTA 588
Query 598 ACACTGGGGTA 608
||||| |||||
Sbjct 589 ACACTCGGGTA 599
> AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 |
chr4:5992966-5994258 FORWARD LENGTH=984
Length=984
Score = 449 bits (243), Expect = 1e-125
Identities = 353/406 (87%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 54 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 113
Query 61 GAAGATCAACTTCT-GATTGATTACATACGTACTAATGGTGAAGGCTCTTGGCGTTCTCT 119
|||||||||| ||| | | ||||| || |||| | | |||||||| | ||||||||||||
Sbjct 114 GAAGATCAACGTCTCG-TAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCT 172
Query 120 TCCTAAATCCGCCGGGTTGTTGCGGTGTGGAAAAAGTTGTAGATTAAGGTGGATTAATTA 179
|||||||||||| || |||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 173 TCCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTA 232
Query 180 TCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGATCAAATCATTGTTAA 239
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||
Sbjct 233 CCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAA 292
Query 240 ACTTCATAGTTTATTCGGCAACAAATGGTCTTTGATAGCTGGGAA-ATTACCGGGAAGGA 298
||| ||||| ||| |||| ||||||||||| ||||||||||| || |||||| ||||| |
Sbjct 293 ACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGG-AAGATTACCAGGAAGAA 351
Query 299 CAGATAATGAGATTAAA-AACTATTGGAACACTCATATAAAGCGAAAGCTTCTTAGCCAT 357
||||||| || || ||| || ||||||||||||||||| ||| | ||||||||||| ||
Sbjct 352 CAGATAACGAAAT-AAAGAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCAC 410
Query 358 GGCATTGACCCAAAAACTCACCGTTC-GATTAACGTATCCAAAACG 402
|| ||||| ||| ||||||| ||| | |||||||| ||||||||||
Sbjct 411 GGTATTGATCCACAAACTCATCGT-CAGATTAACGAATCCAAAACG 455
> AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 |
chr4:18053551-18054999 FORWARD LENGTH=1287
Length=1287
Score = 183 bits (99), Expect = 1e-45
Identities = 271/350 (77%), Gaps = 28/350 (8%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 316 ATGGGAAGGTCACCGTGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAA 375
Query 61 GAAGATC-A-A--CTTCTGATTGATTACAT-AC-GTACTAATGGTGAAGGCT-CTTGGCG 113
|| || | | | || | | | | ||||| | | || |||| ||||||| || || |
Sbjct 376 GAGGA-CGAGAGGCT-C-G-TCGCCTACATTAAAG--CTCATGGAGAAGGCTGCT-GGAG 428
Query 114 TTCTCTTCCTAAATCCGCCGGG-TTGTTGCGGTGTGGAAAAAGTTGTAGAT-TAAGGTGG 171
||||| || ||| ||||||| || || || ||||| || || || | | | |||||
Sbjct 429 ATCTCTCCCCAAAGCCGCCGGACTTCTT-CGCTGTGGCAAGAGCTGCCG-TCTCCGGTGG 486
Query 172 ATTAATTATCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGT-GAAGATCAAA- 229
|| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| | ||
Sbjct 487 ATCAACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGA-GGAAGAAGA-CGAAC 544
Query 230 TCATTGTTAAACTTCATAGT-TTATTCGGCAACAAATGGTCT-TTGATAGCTGGGAAATT 287
|||| | || || ||||| || || |||||||||||||| || || || |||| |||
Sbjct 545 TCATCATCAAGCTCCATAGCCTTCTT-GGCAACAAATGGTCGCTT-ATTGCCGGGAGATT 602
Query 288 ACCGGGAAGGACAGATAATGAGATTAAA-AACTATTGGAACACTCATATA 336
||||||||| |||||||| ||||| ||| |||||||||||||| ||||||
Sbjct 603 ACCGGGAAGAACAGATAACGAGAT-AAAGAACTATTGGAACACGCATATA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5