BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473682
Length=3966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family pro... 2621 0.0
AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 161 4e-38
> AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089869-13097078 FORWARD LENGTH=4298
Length=4298
Score = 2621 bits (1419), Expect = 0.0
Identities = 1652/1759 (94%), Gaps = 38/1759 (2%)
Strand=Plus/Plus
Query 1 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGAAGCA 60
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 126 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGCA 185
Query 61 GCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACCTCCAATGcttcttcttcttcttct 120
||||||||||||||||||||||||||||| |||||| ||| | |||||||||||
Sbjct 186 GCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACC-ACAA----AC-GCTTCTTCTTCT 239
Query 121 tcttcttcCCATTTCACTCCTTTGGCTCATCCTCCAATTACAGG-AAATAGCACTAAGCC 179
|| || ||||||||||||||||||||| |||| |||||||| || |||| |||||||||
Sbjct 240 TCGTCATCCCATTTCACTCCTTTGGCTAATCCACCAATTAC-GGCAAATCTCACTAAGCC 298
Query 180 TCCTGCGAAAAGACAATCTACTCTCGATAAATTCATCGGAAGAACCGAGCATAGACCGGA 239
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct 299 ACCTGCGAAGAGACAATCTACTCTCGATAAATTCATCGGCAGAACCGAACATAAACCGGA 358
Query 240 GAATCAAGTTGTTTCCCAGTCGAATTTTGATGAATTTGAATGTGGTGGTAACGATGACGA 299
||||| | | | ||| | ||| | | | ||||||| ||||||| ||||
Sbjct 359 GAATC-A------T-CAAGTTG---TTT-CCG-A---G--TGTGGTGTTAACGATAACGA 400
Query 300 TAAGAGTCCTTTAGTTGGGATTGATCCTGAGGCTGCTAAAACTTGGATTTATCCAGTGAA 359
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 401 TAATAGTCCTTTAGTTGGGATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAG-G-- 457
Query 360 TGGGAGTGTTCCTCTT-AGAGATTATCAGTTTGCTATAACGAAGACCGCTTTGTTTTCGA 418
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 458 T---TTTGTTCCT-TTAAGAGATTATCAGTTTGCTATAACGAAGACTGCTTTGTTTTCGA 513
Query 419 ATACATTGGTGGCTTTGCCGACCGGACTTGGTAAAACGCTTATAGCTGCAGTTGTTATGT 478
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 514 ATACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCGGTTGTTATGT 573
Query 479 ATAATTACTTCAGATGGTTTCCAGAAGGTAAAATTGTATTTGCGGCGCCTTCTAGGCCTC 538
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 574 ATAATTACTTCAGATGGTTTCCACAAGGTAAAATAGTATTTGCGGCGCCTTCTAGGCCTC 633
Query 539 TTGTGATGCAGCAGATTGAGGCATGTCATAATATTGTGGGAATACCACAAGAATGGACAA 598
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 634 TTGTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACCACAAGAATGGACGA 693
Query 599 TTGACTTGACGGGACAGACATGCCCTTCAAAAAGAGCCTTCTTGTGGAAAAGCAAACGGG 658
||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 694 TTGACTTGACGGGTCAGACATGTCCTTCGAAAAGAGCTTTTTTGTGGAAAAGCAAACGGG 753
Query 659 TTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAGTCAGGAACATGTCTTACTA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAGTCAGGAACATGTCTTACTA 813
Query 719 ACTACTTGGTTTGTTTGGTGATCGACGAGGCACATCGAGCGTTAGGAAATTATTCTTATT 778
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 814 ACTACTTGGTTTGCTTGGTGATCGACGAGGCACATCGAGCTTTAGGGAATTATTCTTATT 873
Query 779 GTGTTGTAGTTCGTGAGTTGATGGCGGTACCAG-TACAATTGAGAATACTGGCTCTTACT 837
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 874 GTGTTGTAGTTCGTGAGTTGATGGCGGTACC-GATACAGCTGAGAATACTGGCTCTTACT 932
Query 838 GCAACTCCTGGATCAAAGACACTGGCCATCCAGGGTATCATTGATAATTTGCAGATATCC 897
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 933 GCAACTCCTGGATCAAAGACACAGGCCATCCAGGGTATCATTGATAATTTGCAGATATCC 992
Query 898 ACACTTGAATATCGAAATGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ACACTTGAATATCGAAATGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAA 1052
Query 958 TTAGAACTAATCGAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTCTTT 1017
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1053 TTAGAAGTCATCGAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTGTTT 1112
Query 1018 GATGTTATACGTCCGTATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGAT 1077
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CATGTTATACGTCCATATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGAT 1172
Query 1078 TTACAGACTTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTCAAGCACCT 1137
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 ATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTCAAGCACCT 1232
Query 1138 CTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTTCAGCTCTTATC 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1233 CTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTGCAGCTCTTATC 1292
Query 1198 ACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCATATGAGATG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1293 ACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCGTATGAGATG 1352
Query 1258 CTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATT 1412
Query 1318 AGGAAGACAAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTG 1377
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 AGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTG 1472
Query 1378 TCGAAGATGTTAGAAATACTAGTTGATCATTTCAAAGTGAAAGATCC-AAGGACATCACG 1436
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1473 TCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAA-GACATCACG 1531
Query 1437 GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAA 1591
Query 1497 TATTGGAGATGTGGTCAAAGCAACCGAGTTTATTGGTCAAAGTTCAGGTAAGACACTGAA 1556
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1592 TATTGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAA 1651
Query 1557 AGGGCAGTCACAAAAAGTTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAA 1616
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 AGGCCAGTCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAA 1711
Query 1617 TGTTATTGTCGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 TGTTATTGTCGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGT 1771
Query 1677 TATATGTTTTGATGCTAATGTATCCCCTCTGAGGATGATTCAACGCATGGGAAGAACCGG 1736
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1772 TATATGTTTTGATGCTAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGG 1831
Query 1737 AAGGAAAAATAATGGTCGA 1755
|||||||||||||||||||
Sbjct 1832 AAGGAAAAATAATGGTCGA 1850
Score = 1954 bits (1058), Expect = 0.0
Identities = 1303/1417 (92%), Gaps = 33/1417 (2%)
Strand=Plus/Plus
Query 1756 ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCATT 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1986 ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTT 2045
Query 1816 CCACGTGGAACGAAACTACAAGATGAGTATGCCACTGAGACTCCAGCTTTCAAGAAAAAG 1875
|||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 2046 CCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAG 2105
Query 1876 CTTACATCTGCAGAAATGGATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAG 1935
|||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 CTTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAG 2165
Query 1936 TTGAGAGTGTCCTTAATTGCCTTCCCTCACTTCCAGACATTGCCATCCAAAGTGCACAAA 1995
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2166 TTGAGAGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAA 2225
Query 1996 GTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCATTTGCAAGAGCCA 2055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2226 GTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCA 2285
Query 2056 ACTTTTTCAGAGCAGAGTAAAAGTTTCTTCACTGAGTTTGGAGCTCCTTTGGGTGAAAGA 2115
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2286 ACTTTTTCAGAACAGAGTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGA 2345
Query 2116 GAAGAGCTTGATACAGGTCTGAGGGTTACTAATGATCCAAAAGATTTACACTGTTTCCGT 2175
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2346 GAAGAGCTTGATACAGGTCTGAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGT 2405
Query 2176 GAGTTGGAAGTCAACACATCACAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACC 2235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2406 GATTTGGAAGTCAACACATCACAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACC 2465
Query 2236 TTAGAGACTACAGAGAAAGATTACGAAGAATCTTCACCCACACACTGTTATCTTTTCAGT 2295
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2466 TTAGAGACAACAGAGAAGGATTACGAAGAATCTTCACCCACACACCGTTATCTTTTCAGT 2525
Query 2296 TCAGAATGTGCAGCCGTTGATACTCTGGGGAAGGTCTTCGTAATGCCAGTTCCTCTTTCA 2355
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 2526 TCAGAATGTGCATCCGTTGATACTCTGGGGAACGTCTTCGTAATGCCAGTTCCTCTTTTA 2585
Query 2356 TTCTTTTCTAATGTTCTGGAGTCAGACAATATGCCTCTGCCTAAAACAGAAAAACAACAT 2415
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2586 TTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGCCTAAAACAGAAAAACAACAT 2645
Query 2416 TCTTGCCAGAATATTTCCCACATTGACTCAGTTCC-GATAGATACTCCGGCAAAACATCG 2474
||||||| ||||| || |||||||||| |||||| | |||||||| ||| |||||||||
Sbjct 2646 TCTTGCCGGAATACATCTCACATTGACTTAGTTCCAG-TAGATACTTCGGAAAAACATCG 2704
Query 2475 GCAAGATAATATTTCA-GACAAGTTAAAAGAAAGATTCTCGCCAGACGGTGCCAACAAGA 2533
|||||||||||| ||| | ||||||||| ||||||||||||||||||||||||| | |||
Sbjct 2705 GCAAGATAATATCTCATG-CAAGTTAAAGGAAAGATTCTCGCCAGACGGTGCCAGCGAGA 2763
Query 2534 CACTAGAGAATCATAGCCATGTGAAAAGGCACTCCACCAGTGTAGGTCAAGAAGATGTTG 2593
||||||||| |||||||| |||||||||| |||||||||| |||||| |||| ||||| |
Sbjct 2764 CACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATGATGTAG 2823
Query 2594 GGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGACGACTGGGAGGGCTTGGAGC 2653
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2824 CGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGAGC 2883
Query 2654 TTAGTCCAAGACTCACTAATTTCATCAAGAGTGGCGTTGTTCCAGAGTCACCTGTCTATG 2713
|||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2884 TTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATG 2943
Query 2714 ACCAAGGAGTTGCAAATGAAGCAAATAGAGAAGACCTTGATTTTCCTCAGGTTTCTTCAC 2773
||||||| | | || ||| || | | |||||| ||||| ||||||||| |||||||||
Sbjct 2944 ACCAAGG-G--G-AAGCGAA-CAGAGA-AGAAGATCTTGAATTTCCTCAGCTTTCTTCAC 2997
Query 2774 CCATGAGGTTAAGTAACGAATTGGCAGGAGAGCCTTCTTCCCCTGAGACAAAGGTTCAGC 2833
|||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 2998 CCATGAGGTTCAGTAACGAATTGGCAGGAGAGTCTTCTTTCCCTGAGAGAAAGGTTCAGC 3057
Query 2834 AT--G--C---G-T-----C-T-------ACAACCAATGAATTGAGAACTCCTCAGAAGG 2872
|| | | | | | | ||||||| |||||||||||||||||||||||
Sbjct 3058 ATAAGTGCAACGATTATAACATTGTGTCTACAACCACTGAATTGAGAACTCCTCAGAAGG 3117
Query 2873 AGGTAGGTACGGCCAACGGAACAGAATGCTTGGCTGTTTCTCCCATTCCTGAGGAGTGGA 2932
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 3118 AGGTAGGTTTGGCCAACGGAACAGAATGCTTGGCTGTTTCTCCTATTCCTGAGGATTGGA 3177
Query 2933 GAACTCCCTTGGCTAATCTCACAAACACAAACAGCAGTGCTAGTAAAGATTGGCGGGTGA 2992
||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||
Sbjct 3178 GAACTCCCTTGGCGAATCTGACAAACACAAACAGCAGCGCTCGCAAAGATTGGCGGGTGA 3237
Query 2993 GTTCTGGAGAAAAGTCAGAAACTATTCGACAGCCTCGAAAGTTGAAGAGACTACGTAGAC 3052
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 3238 GTTCTGGAGAAAAGTTAGAAACTCTTCGACAGCCTCGCAAGTTGAAGAGACTACGTAGAC 3297
Query 3053 TTGGCGATTGCTCGAGTGCTGTAAAGGAGAATAATCCTGGTATTAAAGAGGCAGACCATA 3112
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 3298 TTGGAGATTGCTCGAGTGCTGTAAAGGAGAATTATCCTGGTATTACAGAGGCAGACCATA 3357
Query 3113 TCAGATCTCGTTCTCGACG-TAAAAAGCTCATTAGAG 3148
|||||||||||||||| || |||||||| ||||||||
Sbjct 3358 TCAGATCTCGTTCTCG-CGGTAAAAAGCACATTAGAG 3393
Score = 819 bits (443), Expect = 0.0
Identities = 563/617 (91%), Gaps = 23/617 (4%)
Strand=Plus/Plus
Query 3357 GGTCAATGAGCTTACTAAAAATCACAAGGTATCCTTCCACAGACGTTCTCTTCTCAGCCA 3416
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3698 GGTCAATGAGCTTATTAAAAATCACAAGGTATCCTTCCACAGGCGTTCTCTTCTCAGCCA 3757
Query 3417 GTCACCATTACCGGCGAGGTTTCGTGATTTAGCCGCATCAAGTCCGAGTCCCTATTCTGC 3476
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3758 GTCACCATTACCGGCGAGATTTCGTGATTTAGCCGCATCAAGTCTGAGTCCTTATTCTGC 3817
Query 3477 TGGACCCTTGAAGAGAATAAATGAGAGCAGAAGCGACTCAGATAAATCATTGTCTTCGTC 3536
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3818 TGGACCCTTGACGAGAATAAATGAGAGCAGAAGCGACTCAGATAAATCATTGTCTTC-TC 3876
Query 3537 TCTTCGAACCCCACAAACAACAAACTCTGAGTCAAACCAAGATGCAATGGTCATAGGAGA 3596
| | ||||| ||| ||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 3877 T-T-CGAACACCAAAAACAACAAACTCTGAGTCAAACCAAGATGCAATGATGATAGGAAA 3934
Query 3597 CTTTTCGGTAGTACAAATCTCATCAGAGAGCCGGAAAAGGAAATTCAGCTTATGCAACTC 3656
| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 3935 CCTTTCGGTAGTACAAATCTCGTCAGATAGCCGGAAAAGGAAATTTAGCTTATGCAACTC 3994
Query 3657 AGG-GAATGTCCCCGTGATTAACTTAGAAAGCAAGTTTGCAGC--A--CA-AA-CCACAG 3709
|| ||||| ||||||||||||||||||||||||||||||||| | || || |||| |
Sbjct 3995 -GGCGAATGCCCCCGTGATTAACTTAGAAAGCAAGTTTGCAGCTCATGCACAAGCCACGG 4053
Query 3710 AGAAGGAAAGCCATGAAGGCGTGAGAAGCAATGCAGGTGCATTAGAATACAATGATGGTG 3769
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 4054 AGAAGGAAAGCCATGAAGGCGTGAGAAGCAATGCAGGTGCGTTAGAGTACAATGATG--- 4110
Query 3770 TTGACGATGATGATGATGCATTCTTCGCAACACTAGACTTTGATGCCATGGAAGCACAAG 3829
| |||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 4111 ---A---TGATGATGATGCATTCTTTGCGACACTAGACTTTGATGCAATGGAAGCACAAG 4164
Query 3830 CCACATTGTTATTGTCTAAACAGAGGTCAGAAGCAAAAGAGAAGGAAGATGCAGCAACGG 3889
|||||||||||||||| |||||||| || |||||||||||||| ||||| | |||||||
Sbjct 4165 CCACATTGTTATTGTCGAAACAGAGATCCGAAGCAAAAGAGAAAGAAGA--C-GCAACGG 4221
Query 3890 TTATAGCAAATCCAGGCATGCAGAGGAGTGATGGTGTGGAGAAAGATGCGCCATCTTTTG 3949
||||| | ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 4222 TTATACCTAATCCAGGCATGCAGAGAAGTGATGGTATGGAGAAAGATGCACCATCTTTTG 4281
Query 3950 ATCTTGGTCTGTGGTGA 3966
|||||||||||||||||
Sbjct 4282 ATCTTGGTCTGTGGTGA 4298
Score = 294 bits (159), Expect = 4e-78
Identities = 167/171 (98%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 3151 AAGAAGAAGATGATCATAGATGATGATGTCCAAGTCTTCATTGACGAAGAAGCTGAGGTC 3210
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3459 AAGAAGAAGATGATCATGGATGATGATGTCCAAGTCTTCATTGACGAGGAAGCTGAGGTC 3518
Query 3211 TCTTCGGGAGCAGAAATGTCGGCTGATGAGAACGAAGATGTGACTGGCGATTCATTTGAA 3270
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3519 TCTTCGGGAGCAGAGATGTCGGCTGATGAGAACGAAGATGTGACTGGCGATTCATTTGAA 3578
Query 3271 GATAGTTTCATAGATGACGGGACAATGCCTACAGCAAATACTCAAGCCGAG 3321
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3579 GATAGTTTCATAGATGACGGAACAATGCCTACAGCAAATACTCAAGCCGAG 3629
> AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1);
Has 18 Blast hits to 18 proteins in 5 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:13433919-13434340 REVERSE LENGTH=351
Length=351
Score = 161 bits (87), Expect = 4e-38
Identities = 93/96 (97%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGAAGCA 60
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 31 ATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGCA 90
Query 61 GCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACC 96
||||||||||||||||||||||||||||||||||||
Sbjct 91 GCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACC 126
Score = 152 bits (82), Expect = 2e-35
Identities = 171/210 (81%), Gaps = 22/210 (10%)
Strand=Plus/Plus
Query 145 GCTCATCCTCCAATTACAGG-AAATAGCACTAAGCCTCCTGCGAAAAGACAATCTACTCT 203
|||||||| |||||||| || |||| |||||| || |||||||||||||||||||||||
Sbjct 133 GCTCATCCACCAATTAC-GGAAAATCTCACTAAACCACCTGCGAAAAGACAATCTACTCT 191
Query 204 CGATAAATTCATCGGAAGAACCGAGCATAGACCGGAGAATCAAGTTGTTTCCCAGTCGAA 263
||||||||||||||| |||||||| | || ||| |||| || | | | || ||
Sbjct 192 CGATAAATTCATCGGTAGAACCGAACCTAAACC--AGAA--AA-T-----C--A-TC-AA 237
Query 264 TTTTGATGAATT-TGAATGTGGTGGTAACGATGACGATAAGAGTCCTTTAGTTGGGATTG 322
|| | | || ||| ||||||||||| ||| ||||||| |||| |||||||| |||||
Sbjct 238 GTT-G-T---TTCTGAGTGTGGTGGTAATGATAACGATAATAGTCTTTTAGTTGAGATTG 292
Query 323 ATCCTGAGGCTGCTAAAACTTGGATTTATC 352
|||||||||| |||||||||||||||||||
Sbjct 293 ATCCTGAGGCAGCTAAAACTTGGATTTATC 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 197607588477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5