BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473685
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35560.1 | Symbols: | TCP family transcription factor | ch... 1805 0.0
> AT1G35560.1 | Symbols: | TCP family transcription factor |
chr1:13115826-13117235 REVERSE LENGTH=1410
Length=1410
Score = 1805 bits (977), Expect = 0.0
Identities = 1260/1388 (91%), Gaps = 54/1388 (4%)
Strand=Plus/Plus
Query 1 CAAGTTTGTTTGTTAGTTTATTCCAtttttttgtgt-ttttttttCCCATAATTTATAAA 59
|||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 39 CAAGTTTGTTTGTTTGTTTATTCCATTTTCTTGTGTGTTTTTTTCCCCATAATTTATAAA 98
Query 60 TTTTATAATC-A-ATGGAGT-------------CC----C-ACAACAACACCACTGGTTC 99
|||||||| | | ||||||| || | |||||||||||||||||||
Sbjct 99 TTTTATAAGCAATATGGAGTCCCACAACAACAACCAGAGCAACAACAACACCACTGGTTC 158
Query 100 GGCCCATCTGGTCCCATTCATGGGACCAATCTCCGGTTCAG------TAACAACCACCGC 153
||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||
Sbjct 159 GGCCCATCTGGTCCCATCCATGGGACCAATCTCCGGTTCAGTCTCATTAACCACCACTGC 218
Query 154 TCAAAATTCCACTACCACCACCGTCTCGGCCGCTAAAACACCGGCCAAACGACCCTCCAA 213
|| ||| |||||||||||||||||| | |||||||||||||| || |||||||| |||||
Sbjct 219 TCCAAACTCCACTACCACCACCGTCACCGCCGCTAAAACACCCGCAAAACGACCGTCCAA 278
Query 214 GGACCGCCACATCAAAGTAGACGGTCGCGGCCGGAGGATACGTATGCCGGCTATCTGCGC 273
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 279 GGACCGTCACATCAAAGTAGACGGACGTGGCCGGAGGATACGTATGCCGGCTATCTGCGC 338
Query 274 GGCGCGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCAGACGGCGAGACTATAGA 333
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 339 AGCACGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCGGACGGCGAGACTATAGA 398
Query 334 GTGGCTGCTCCAACAAGCGGAGCCGGCTATCATCGCCGCCACCGGAACCGGAACCATACC 393
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 399 GTGGCTGCTCCAACAAGCGGAGCCAGCTATCATCGCAGCCACCGGAACTGGAACCATACC 458
Query 394 GGCGAATATCTCTACTTTGAACGTCTCTCTCCGAAGTAGTGGCTCTACCCTCTCAGCTCC 453
|||||||||||||||||||||| ||||||| ||||| ||||||||||| || ||||||||
Sbjct 459 GGCGAATATCTCTACTTTGAACATCTCTCTTCGAAGCAGTGGCTCTACTCTTTCAGCTCC 518
Query 454 ACTGTCTAAATCTTTCAACATCGGAAGAGCTGCTCAAAACGCTGCCGTTTTCGGGTTCCA 513
|||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 519 ACTGTCTAAATCTTTCCACATGGGAAGAGCGGCTCAAAACGCTGCCGTTTTTGGGTTCCA 578
Query 514 GCAACAGCTTTATCCTCCTCATCACATCATGACAGAttcttcttcttcttctcttcCCAA 573
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 579 GCAACAGCTTTATCATCCTCATCATATCACGACAGATTCTTCTTCTTCTTCTCTTCCCAA 638
Query 574 AATATTCCGTGAAGAAGATCTCTTTAAAGATCCTAATTCCCTCGATCAAGAACCCGGTTC 633
|| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 639 AACATTCCGTGAAGAAGATCTTTTTAAAGATCCTAATTTTCTAGATCAAGAACCCGGTTC 698
Query 634 AAGATCGCCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGG-TCTAACCCGGTCAA 692
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 699 AAGATCACCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGGTTC-GACCCGGTCAA 757
Query 693 GAACACAAAACATGATACCGCCGATGTGGGCAGTGGCGGCGCCAACGCCAGCCTCCACAA 752
|||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 758 GAACACAAAATATGATACCGCCGATGTGGGCACT---AGCGCCAACGCCAGCCTCCACAA 814
Query 753 ACGGAGGTAGTGCGTTTTGGATGTTACCAGTC---GGAGGAGGAGGTCCGGCCAACGTTC 809
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 815 ACGGAGGTAGTGCTTTTTGGATGTTACCAGTCGGAGGAGGAGGAGGTCCGGCTAACGTTC 874
Query 810 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 934
Query 870 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAATTAGGGTTAGGTGTTGCTGATA 929
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 935 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAGTTAGGGTTAGGTGTTGCAGAAA 994
Query 930 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGGCGGTGGTCGGGTTGGTCTTGGAA 989
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 995 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGACGGTGGTCGGGTTGGTCTCGGAA 1054
Query 990 TGAGTCTAGAGCAAAAACCTCAACATCAAGTGAGTGATCATGCTACT-GAAGACCAAAAT 1048
||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1055 TGAGTCTTGAGCAAAAGCCTCAACATCAAGTGAGTGATCATGCTACTAGA-GACCAAAAT 1113
Query 1049 CTTACTATTGATGGTTCTCCTTGAAGAGACGTCATAAtttttttggtttttAAAAAGTGT 1108
| |||||| |||||||||||||||| |||| |||| |||| |||||||||||||||||||
Sbjct 1114 CCTACTATAGATGGTTCTCCTTGAA-AGACTTCATGATTTCTTTGGTTTTTAAAAAGTGT 1172
Query 1109 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCGATGTTAATATGGGTTTTAGGGT 1168
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1173 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCAATGTTAATATGGGTTTTAGGGT 1232
Query 1169 TTGCTTTTCGGGATTGCCAAATTGTTATTTTAA-AAAATGGAAGt-tt-ttttCGTTGCA 1225
| |||||||||||||||||||||||||||| || |||||||| | || |||| ||||||
Sbjct 1233 TGGCTTTTCGGGATTGCCAAATTGTTATTT-AAGAAAATGGATTTATTGTTTTGGTTGCA 1291
Query 1226 CCAA-AGATAAAATGAGTTTTGCAACTCTTTTTATTTGATAAAAAAGCATGTCACTGAAG 1284
|| | || || |||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1292 T-AATA-ATTAAC-GAGTTTTGCAACTCTTTTTATTCGATGCAAAAGCATGTCACTTAA- 1347
Query 1285 AGTGAAGTAAATATAGTTGAATCT--ATGGGTAACATAATGAACAAAAGAATATATTAAA 1342
|| ||| | ||||||||||||| ||| ||||||||||| ||||||||||| ||||||
Sbjct 1348 AG-GAA--A--TATAGTTGAATCTCTATGTGTAACATAATGGACAAAAGAATAAATTAAA 1402
Query 1343 TATTTATC 1350
||||||||
Sbjct 1403 TATTTATC 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5