BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473690
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35620.1 | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-l... 2333 0.0
> AT1G35620.1 | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like
5-2 | chr1:13156368-13158467 FORWARD LENGTH=1646
Length=1646
Score = 2333 bits (1263), Expect = 0.0
Identities = 1477/1581 (93%), Gaps = 11/1581 (1%)
Strand=Plus/Plus
Query 31 AGTTTGTTACACAGTCTTGTAGTATCAGAAACCTTTTTAAGTTTGGTCTGAAAAATTAGA 90
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 73 AGTTTGTTACACAGTCTTGTAGTATCAGAAACCTTCTTAAGTTTGGTCTG-AAAATCAGA 131
Query 91 TCGAGATGCGTTCGTTAGGGTTAATACTCTGTTGGATCTCGTTTCTTACGTTATCAATCT 150
||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 132 TCGAGATGCGTTCGTTAAAGTTACTCCTTTGTTGGATCTCGTTTCTTACGTTATCAATCT 191
Query 151 CAATCCCTGCATCGTCTGATGATCAATTCACCGTCGACGGAACAGTTTTAGAACTCACCG 210
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 192 CAATCTCTGCATCGTCAGATGATCAATTCACCCTCGACGGAACAGTTTTAGAACTCACCG 251
Query 211 ATTCGAATTTTGATTCGGCGATTTCAACTTTCGATTGCATCTTTGTTGATTTCTATGCTC 270
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATTCGAATTTCGACTCGGCGATTTCAACTTTCGATTGCATCTTTGTTGATTTCTATGCTC 311
Query 271 CTTGGTGTGGTCACTGCAAGCGTCTCAATCCCGAGTTAGACGCAGCTGCTCCAATTCTTG 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTTGGTGTGGTCACTGCAAGCGTCTCAATCCCGAGTTAGACGCAGCTGCTCCAATTCTTG 371
Query 331 CTAAATTGAAGCAGCCTATCATTATTGCGAAGCTGAATGCTGATAAGTATTCGCGTCTCG 390
||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||
Sbjct 372 CTAAATTGAAGCAGCCTATTGTGATTGCAAAGCTGAATGCTGATAAGTATTCTCGTCTCG 431
Query 391 CACGGAAGATTGAGATTGATGCATTCCCGACTCTCATGCTCTATAACCATGGAGTTCCAA 450
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 432 CTCGGAAGATTGAGATTGATGCATTTCCGACTCTCATGCTTTATAACCATGGAGTTCCAA 491
Query 451 TGGAGTACTATGGACCGAGGAAAGCAGATTTGCTTGTTCGTTACTTGAAGAAGTTTGTTG 510
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 492 TGGAGTACTATGGACCAAGGAAAGCAGATTTGCTTGTGCGTTACTTGAAGAAGTTTGTTG 551
Query 511 CTCCAGATGTTGCGGTTCTTGAGTCAGACTCAGCTGTCAAGGAGTTTGTTGAAGATGCTG 570
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 552 CTCCAGATGTTGCGGTTCTTGAGTCAGACTCAACTGTCAAGGAGTTTGTTGAAGATGCTG 611
Query 571 GGACTTTCTTCCCGGTGTTTATCGGGTTTGGTTTGAACGAATCGTTGATATCAGTCTTAG 630
|||| |||||||| |||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 612 GGACATTCTTCCCTGTGTTTATCGGGTTTGGTTTGAACGAATCGATAATATCAGGATTAG 671
Query 631 GTGGGAAGTATAAGAAGAAGGCATGGTTTGCTGTTGCAAAGGATGTTTCAGAGGATACAA 690
|| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 672 GTCGGAAGTATAAGAAGAAGGCATGGTTTGCTGTTTCAAAGGAAGTTTCAGAGGATACTA 731
Query 691 TGGTTTCTTATGATTTTGATAAGGCTCCTGCATTAGTAGCCAAACATCCTACGTACAATG 750
||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||
Sbjct 732 TGGTTTCTTATGATTTTGATAAGGCTCCTGCATTAGTTGCCAATCATCCAACTTACAATG 791
Query 751 AGCATAGCGTCTTTTACGGGCCATTCGAAGATGGATTCTTGGAGGAATTTGTGAATCAGA 810
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 792 AGCATAGCGTGTTTTACGGGCCATTCGAAGATGGATTCTTGGAGGAATTTGTGAAACAGA 851
Query 811 GTTTCCTTCCTCTGATTCTGCCTATAAACCAGGACAC-TCTGAAGCTGCTGAAGGACGAT 869
|||| |||||| ||||||| ||||| ||||| ||||| | ||||| || |||||||||||
Sbjct 852 GTTTTCTTCCTTTGATTCTACCTATTAACCATGACACAT-TGAAGTTGTTGAAGGACGAT 910
Query 870 GAGAGAAAGATTGTCTTGACAATTGTGGAAGATGAAACTCACGAAAGCTTGGATAAACTA 929
|||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 911 GAGAGAAAGATTGTCTTGACGATCGTGGAAGATGAAACACACGAAAGCTTGGAGAAACTA 970
Query 930 -ATCAAAGCACTGAGAGCAGCTGCTCATGCGAACCGCGACCTTGTTTTTGGCTACGTCGG 988
| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 971 TA-CAAAGCATTGAGAGCAGCTGCTCATGCGAACCGCGACCTCGTTTTTGGCTACGTCGG 1029
Query 989 TGTGAAGCAGTTTGAAGAGTTTGTAGACTCGTTTCATGTAGACAAGAAGACAAATCTTCC 1048
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1030 TGTGAAGCAGTTTGAAGAGTTTGTTGACTCGTTTCATGTAGACAAGAAGACAAATCTGCC 1089
Query 1049 TAAGATTGTTGTGTGGGATGGAGATGAAGAGTATGATCAGGTTACCGGCATAGAGACCAT 1108
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1090 TAAGATTGTTGTGTGGGATGGAGATGAAGAGTATGATCAGGTGACGGGTATAGAGACCAT 1149
Query 1109 TAGCCAAGAGGAAGATCATTTGACTCAAGTGTCCCGGTTTCTAGAGGGATATAGAGAAGG 1168
| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1150 AACCCAAGAGGAAGATCATTTGACCCAAGTGTCTCGGTTTCTAGAGGGCTATAGAGAAGG 1209
Query 1169 AAGAACAGAGAAGAAGAAAATCAACGGACCATCTTTCATGGGATTTATCAACTCAATGAT 1228
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1210 AAGAACAGAGAAGAAGAAAATCAACGGACCATCGTTCATGGGATTTATCAACTCAATGAT 1269
Query 1229 CGGGATTAGGTCAGTGTACATCATTGTGTTCTTGGTTGCTGTCATTATGATGCTACGGAG 1288
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1270 TGGGATTAGGTCAGTGTACATCCTTGTGTTCTTGGTTGCGGTCATTATGATGCTACGGAG 1329
Query 1289 CCTCGGTCAAGTGGAGGAGCCTGCTGGAGTCAGGACTGCCCCAGCA-TCCCGCGAAAGAG 1347
|||||||||||| ||||||||| |||||||| |||| ||| ||||| ||| | |||||||
Sbjct 1330 CCTCGGTCAAGTTGAGGAGCCTACTGGAGTCCGGACCGCCACAGCAGTCC-GTGAAAGAG 1388
Query 1348 TTGATCAGACCACTAGTGTCACTGAAGGTGAAACCAGTGAGCATAAGCTTAGTGACAAAA 1407
|||||||| |||||| |||| |||||| ||||| |||||||||||||| |||||||||||
Sbjct 1389 TTGATCAGGCCACTACTGTCCCTGAAGATGAAAGCAGTGAGCATAAGCCTAGTGACAAAA 1448
Query 1408 AAGAGGACTAGCTTTTTAGCTACACTTGAATGTGGTATGttttttttCTTCTTTTACACT 1467
||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1449 AAGAGGACTAG-TTTT--GTTACACTTGAATGTGGTATGTTTTTTTTCTTCTTTTATACT 1505
Query 1468 TGAAGCTAACTTATATAGTTCATGGTTGTCTATCTTCTTTATGGCTAGTCTTTTTGAGTT 1527
|||||||||||||||||||||||| || | |||||||||||||| ||||||||||| |||
Sbjct 1506 TGAAGCTAACTTATATAGTTCATGCTTATTTATCTTCTTTATGGTTAGTCTTTTTGGGTT 1565
Query 1528 TTAAACCGACGATTGTTCCAATTTATTTATGAATCCTTTTGGCTCTCTAAT-GCATATCT 1586
|||||| || | |||||||| |||||||||||||| ||||||||||||| | ||||||||
Sbjct 1566 TTAAACGGATGGTTGTTCCATTTTATTTATGAATCATTTTGGCTCTCTAGTTGCATATCT 1625
Query 1587 TTGGGATCCAATGAGGTACTT 1607
||||||| ||||||||||||
Sbjct 1626 TTGGGATGTAATGAGGTACTT 1646
Score = 60.2 bits (32), Expect = 6e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTCTCCTAAAGTAACGTAAGACTTATCAGAAG 32
||||||||||||||||||||||||||||||||
Sbjct 23 TTCTCCTAAAGTAACGTAAGACTTATCAGAAG 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5