BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473691
Length=3446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3306 0.0
> AT1G35660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 309 Blast hits
to 256 proteins in 99 species: Archae - 0; Bacteria - 11;
Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other
Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197976
FORWARD LENGTH=4447
Length=4447
Score = 3306 bits (1790), Expect = 0.0
Identities = 2173/2352 (92%), Gaps = 49/2352 (2%)
Strand=Plus/Plus
Query 1116 GGTTGTACGGGCATATGCACACGAGCAGTTTGCAAGGCTCATTTTGAATAATGACGAGGA 1175
|||||||||||||||||||||||||||||| ||||| | ||| |||||| |||||||||
Sbjct 1584 GGTTGTACGGGCATATGCACACGAGCAGTTCGCAAGATTAATTCTGAATAGTGACGAGGA 1643
Query 1176 ATTTGATTTGAGTTTTGAGTCTAATGGTGTGCAACGTGAAGTCAAAATAACAGACCTAGA 1235
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1644 ATCTGATTTGACTTTTGAGTCTAATGGTGTGCAACGTGAAGTCAAAATAACGGACCTAGA 1703
Query 1236 GGAAGAATCACTTGATCCTGTTACTATTGTTGACCATGAAAATGAGGCCGTGATTTTATC 1295
||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 1704 GGAGGAAGCACTTGATCCTGTTACTATTGCTGACCATGAAAATGAGACCGTGACTTTCTC 1763
Query 1296 AGAGGACAAGTTCACTGAAGATCACTCAATCTCTAATATTGTGCCTGTGCCTTTACTGTC 1355
||| |||||||||||||||||||||||| | ||||||| | |||||||||| ||||
Sbjct 1764 AGAAGACAAGTTCACTGAAGATCACTCAGTTTCTAATA---T---TGTGCCTTTAGTGTC 1817
Query 1356 TGTTAGACCAAAGTTGGAAGCAAATTTGTCACCTTGCAAGGAACTCTTTCATTCAGATAG 1415
|||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct 1818 TGTTCGACCAAAGTTGGAAGCAAATGTGTCACTTTGCAAGGAACTCTTACATTCAGATAG 1877
Query 1416 TCCAGATTCCCACGATACTGAAAGCTCTGTAGTGAACTCCAGTTCAGATACTAGTTTCGA 1475
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1878 TCCAGATTCCCATGATACTGAAGGCTCTGCAGTGAACTCCAGTTCAGATACTAGTCTCGA 1937
Query 1476 TCTTGGTACGGTATGCCAAACTACAACTAGTCCGATCTCATCGAAACTATCAGCAGTAAA 1535
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1938 TCTTGGTACATTATGCCAAACTACAACTAGTCCTATCTCATCGAAACTATCAGCAATAAA 1997
Query 1536 CCATGTTTCTCAAGCTATAAAGTCTCTGAGGTGGACACGGCAACTACAATCTTCAGAACA 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 CCATGTTTCTCAAGCTATAAAGTCTCTGAGGTGGACACGGCAACTACAATCTTCAGAACA 2057
Query 1596 GGAGGATGCATTTCATGATATCTTACCTGATTTTTCCAAATGTGCATGTGGTGATCCTGA 1655
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2058 GGTGGATGCATTTCATGATATCTTACCTGATTTTTCCAAGTGTTCATGTGGTGATCCTGA 2117
Query 1656 TTGTATTGAGGTCTGTGATATCCGTAAGTGGCTACCAACATCTAAACTAGACAGGAAATT 1715
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2118 TTGTATTGAGGTCTGTGATATCCGTAAGTGGCTACCAACATCTAAACTAGATAGGAAATT 2177
Query 1716 GTGGAACCTTGTTCTGCTTCTTGGTGAATCATATCTGTCTCTAGGGGAAGCTTACAAAGA 1775
||||||||| ||| | ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2178 GTGGAACCTCGTTTTACTTCTCGGTGAATCATATTTGTCTCTAGGGGAAGCTTACAAAGA 2237
Query 1776 GGATGGACAGTTGCACCAAGC-TTTACATACTGTGGAATTAGCTTGCTCGTTTTATGGAT 1834
|||| ||||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 2238 GGATAAACAGTTGCACCAAGCGTTGA-ATACTGTGGAATTAGCTTGCTCGATTTATGGAT 2296
Query 1835 CAATGCCACAGAAGTTTGAGGAGACATTGTTTGTTTCCTCGATGAACAAGTCTCTTTCAC 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 CAATGCCACAGAAGTTTGAGGAGACATTGTTTGTTTCCTCGATGAACAAGTCTCTTTCAC 2356
Query 1895 TGCGGTCAAAATCGCATGCAA-A-CTCA-G-GGCC-ATGT-GA--CA---TCAGTG---T 1940
||| |||||||| |||| || | | || | || || | || || |||| | |
Sbjct 2357 TGCAGTCAAAATTTCATGAAAGAACGCAAGTGGAAGATTTAGAAGCAAAATCAGGGCCAT 2416
Query 1941 -TG------G-G--GAA---CTATCATCAACACGCCTCTTCTGGGCTAAAGTATGGATGT 1987
|| | | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2417 CTGACATCAGTGTTGAAGAACTTTCATCAACACGCCTCTTCTGGGCTAAAGTATGGATGT 2476
Query 1988 TGGTTGGCGACATATATGTCCAGTTCCACATTCTTAAAGGTCAGGAGCTCTCCAGAAAAA 2047
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2477 TGGTTGGCGACATATATGTTCAGTTCCACATTCTTAAAGGTCAGGAGCTTTCCAGAAGAA 2536
Query 2048 CAAAGGGGACATCAACCAATCATTTAAAAATGCCA-TCTGAAGTAGTAAAGGAAGTACAG 2106
||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2537 CAAAGGGGACA--A-CCAATCATTTAAAAATGC-AGTCTGAAGTAGTAAAGGAAGTACAG 2592
Query 2107 CGCCTCAAGAAGAAGTTAACTGAGTATAGTCAAAATTGTGCCTCATGTTCATTAGTAAAT 2166
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2593 CGGCTCAAAAAGAAGTTAACTGAGTATAGTCAAAATTGTGCCTCGTGTTCATTAGTAAAT 2652
Query 2167 TGCAGCTGTAAAAGTGACAGAGCAAGCAGTGGAAGCAGCGCAAGTAGCAGCAATGGAAGT 2226
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2653 TGCAGCTGTAAAAGTGACAGAGCAAGCAGTGGAAGCAGTGCAAGTAGCAGCAATGGAAGT 2712
Query 2227 AGTTCTCGTACTGTGCCTCATAGCAGGAAGCACAATAGAAAATTACAGTCCAAGAATGTC 2286
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2713 AGTGCTCGTACTGTGCCTCATAGCAGGAAGCACAATAGAAAATTACAGTCCAAAAATGTC 2772
Query 2287 GCCAGCAGGGTCTCACGAAATGTTGAAGATGAACATGTTAATTTCAAAGTTGAGAACAAG 2346
||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2773 GCCAGCAAGGTCTCACGAGATGTTGAAGATGAACGTGTTAATTTTAAAGTTGAGAACAAG 2832
Query 2347 AGCCATAAAGAAGAAGA-GACA--TCGGGGGAAACAAAAGAAGCTGTCCCTCTGGAGCAG 2403
|||| |||||||||||| |||| ||||| || ||||||| |||||||| ||||||||||
Sbjct 2833 AGCCGTAAAGAAGAAGAAGACACATCGGGTGAGACAAAAGGAGCTGTCCGTCTGGAGCAG 2892
Query 2404 AATGAATCGAACTCTAAGGAAACCCCAGGAGC-AAAAAAGGGTGGAATATTCAAATATCT 2462
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 2893 AATGAATCTAACTCTAAGGAAACTCCAGGAGCGAAAAAAGG-TGGAATATTCAAATATCT 2951
Query 2463 CAAGGGGTCTAAAACTGATGATGCAGAAAGCAATCTGTTGGCTGCCTTAAATTGTTATGA 2522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2952 CAAGGGGTCTAAAACTGATGATGCAGAAAGCAATCTGTTGGCTGCCTTAAATTGTTATGA 3011
Query 2523 GGAAACTCGAAGAGCATTACAGGAGCTTCCAAGCGGCTGTAATGAGTTGCAGTCTGTTCT 2582
|||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
Sbjct 3012 GGAAACACGAAGAGCATTACAGGAGCTTCCAAGCAACTGTAGTGAGTTTCAGTCTGTT-T 3070
Query 2583 T-AGAAAGAAAGGGTGGGTATGTAATGAACTTGGTCGGAACCGTCTAGGGAGCAAAGAGC 2641
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3071 TGAGAAAGAAAGGGTGGGTATGTAATGAACTTGGTCGGAACCGTCTCGGGAGCAAAGAGC 3130
Query 2642 TCAACAAAGCTGAAGACGCCTTTGCTGATGCTATAGTGGCATTCAAGGAAGTTTGCGATC 2701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3131 TCAACAAAGCTGAAGACGCCTTTGCTGATGCTATAGTGGCATTCAAGGAAGTTTGCGATC 3190
Query 2702 ATACTAATGTCATACTAATCAACTGCAACTTGGGTCACGGGCGACGAGCTCTGGCTGAAG 2761
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3191 ATACTAATGTCATACTCATCAACTGCAACTTGGGTCACGGGCGACGAGCTCTAGCTGAAG 3250
Query 2762 AAATGGTTCCAAAGATCGAAGCTCTCAAACTGCATCCTGCGTTTGAAAATGCTTACCAAC 2821
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 3251 AAATGGTTCCAAAGATCGAAGCTCTCGAACTGCATCGTGCTTTTGAAAATGCTTACCAAA 3310
Query 2822 AAGCTCTGGGGACTGCGAAACTTGAATACAGCAAGTCACTTAGGTATTACATGGCAGCAA 2881
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3311 AAGCTCTGGGGACTGCAAAACTTGAATACAGCAAGTCACTTAGGTATTACATGGCAGCAA 3370
Query 2882 AGACAGAACTCAGGGTGGCTACTGAAGAAGCTAGATTG-GTTCCAGACAATCTGAAAGTT 2940
||||||||||||| || || |||| ||||||||| || ||| |||||||| ||||||||
Sbjct 3371 AGACAGAACTCAGTGTTGCCACTGCAGAAGCTAG-TTCAGTTTCAGACAATTTGAAAGTT 3429
Query 2941 GAAGTTTACACACAGCTTGGCAATACCTATCTCAGATTTGGAATGCTTTTAGCAAATGAA 3000
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3430 GAAGTCTACACACAGCTTGCCAATACCTATCTCAGATTTGGAATGCTTTTAGCAAATGAA 3489
Query 3001 GATTCAACCGCTGCAGCTCATGGACAGAAGAGCATCTTGGAAAAGACTCATGATTCGTCT 3060
||| ||||||||||||||| || |||||||| |||||||||||| ||||||||||| |||
Sbjct 3490 GATACAACCGCTGCAGCTCGTGAACAGAAGAACATCTTGGAAAACACTCATGATTCTTCT 3549
Query 3061 TCTGATGGAAAATCCAGCGACTTGAGAAATCATGAAGTATTATCAGCTAGTGACGCTATA 3120
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 3550 TCTGATGGAAAATCCAGCGACTTGAGAAAACGTGAAGTATTATCAGCCAGTGACGCTATA 3609
Query 3121 CGAGAGGCATTGGCTCTATATGAATCTCTCGGGGAAATACGCAAACAAGAAGCCGCATAC 3180
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 3610 AGAGAGGCGTTGGCTCTATATGAATCTCTCGGAGAAATACGCAAACAAGAAGCTGCATTC 3669
Query 3181 GCTTACCTTGAGTTAGCACGGTATCACAAAGATTGCTGCTTGGGATTTCTGAAGACAGAG 3240
||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 3670 GCTTACCTTCAACTAGCACGGTATCACAAAGACTGCTGCTTGGGATTTCTGGAGACAGAG 3729
Query 3241 TGTCAAGGAAGTCCTCTTAAACCGGAGACTAATGTCATTCAGAGAGCCAAACAATATGCT 3300
||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||
Sbjct 3730 CGTCAAGGAAGTCCTCGTAAACCCGAGAGTAATGTCATTCAGAGAGCCAAACAGTATGCT 3789
Query 3301 TTGTTGGCAGATAGGAATTGGCAGAAATCAATGGATTTTTATGGTCCTGAGAATCTTCCT 3360
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 3790 TTGTTGGCAGATAGGAATTGGCAGAAATCGATGGATTTCTACGGTCCTGAGAATCTTCCT 3849
Query 3361 TCCATGTTCCTGACGATCCTGACTGAGAGATCAGCTCTTTCCTTAAGCGTTTCAAATTTC 3420
|| |||||||| |||||||| | |||||||||||||||||||| || ||||||||| |||
Sbjct 3850 TCGATGTTCCTTACGATCCTAATTGAGAGATCAGCTCTTTCCTCAACCGTTTCAAACTTC 3909
Query 3421 TGGCAATTAAAC 3432
||||||||||||
Sbjct 3910 TGGCAATTAAAC 3921
Score = 1256 bits (680), Expect = 0.0
Identities = 807/869 (93%), Gaps = 6/869 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAATCGGCTGCTCCACAACCTCTGCCGATGCCGTTACCTTATCTTTCAACCTCC 60
|||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||
Sbjct 1 ATGGAGCAATCGGCTGCTCCACAACCTCCGACGATGCCGTTACCTTATCTTCCAAGCTCC 60
Query 61 GTTCAAGCTTCGAGAGATGACCTTCAATGTATCGGAACGATGGAGATCGTCCGGCCAAAA 120
||| |||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||
Sbjct 61 GTTGAAGCTTCGAGAGATGATCTTCAATGTATCGGAACTATGGTGATCGTCCCACCAAAA 120
Query 121 CCAGTCGGTTTTCTCTGCGGCTCCATACCTGTTCTCGCCGATAACTCGTTTCCGGCTTCT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCAGTCGGTTTTCTCTGCGGCTCCATTCCTGTTCTCGCCGATAACTCGTTTCCAGCTTCT 180
Query 181 TTTACTTCGGCGCTTCTACCTTCTCAGGAAA-CGTTCGTTACTGCTCCGAGGTACCAAAT 239
||||||||||| || || ||||||||||||| || |||| ||||||||||||||||||||
Sbjct 181 TTTACTTCGGCTCTCCTCCCTTCTCAGGAAACCG-TCGTCACTGCTCCGAGGTACCAAAT 239
Query 240 GCTTCCGATGGAGACAGATCTTAATCGGCCTCCTTTGTTGACTGATTTTCCGGAGAATGT 299
|||||||||||||||||||||||||| |||||||| || ||||||||||| || || ||
Sbjct 240 GCTTCCGATGGAGACAGATCTTAATCTTCCTCCTTTATTAACTGATTTTCCCGATAACGT 299
Query 300 TTTACCTCTCGCCGCCGTCAAGTCTAGGATCACCGGAGATATATCTAAGGAAGCTAATGT 359
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 TTTACCTCTCGCCGCCGTCAAGTCTAGGATCACCGGGGATATATCTAAGGAGGCTAATGT 359
Query 360 AATTGCTTCAAACCTTAGTAAGAAATGTGAAGCACTTGCTGTAT-TAGGTTTAGTGGAAT 418
||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 360 TATTACTTCCAACCTTAGTAAGAAATGTGAAGCACTTGCTGTATCT-GGTTTAGTGGAAT 418
Query 419 ACGGAGATGAGATAGATGTGATTGCTCCTGTTGATATTCTTAAGCAAATCTTTAAGATAC 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGGAGATGAGATTGATGTGATTGCTCCTGTTGATATTCTTAAGCAAATCTTTAAGATAC 478
Query 479 CTTACTCGAAAGCTCGCGTCTCCATAGCAGTTCAGCGCGTTGGGCAGACTCTCGTCTTGA 538
|||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||||||
Sbjct 479 CTTACTCGAAAGCTCGGGTTTCGATAGCGGTTCAGCGGGTTGGACAGACTCTCGTCTTGA 538
Query 539 ACCCTGGACCTGATGTTGAAGAGGGAGAGAAACTGATTAGGAGGCACAGCAATCAACCCA 598
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 539 ACCCTGGACCTGATGTTGAAGAGGGAGAGAAACTGATTAGGAGGCATAACAATCAACC-A 597
Query 599 AA-TGTACAAAAAACGTTGACGAATCTTTGTTTCTAAACTTTGCTATGCATTCAGTAAGG 657
|| ||||||||||| || || |||||||||||| |||||||||||||||||||||| |||
Sbjct 598 AAGTGTACAAAAAATGTGGATGAATCTTTGTTTTTAAACTTTGCTATGCATTCAGTGAGG 657
Query 658 ATGGAGGCGTGTGATATTCCCCCGACGCATCGCCCACATACAGAAAAACATTCGAGTTCT 717
|||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 658 ATGGAGGCGTGTGATATTCCCCCGACGCATCGTGAACATACAGAGAAACGCTCGAGTTCT 717
Query 718 TCTGCTCTCCCTGCTGGAGAGAACTCTCATGATAGTGCTCCAGACGACAGACTTGACAAT 777
|||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 718 TCTGCTCTACCTGCTGGAGAGAACTCTCATGATAATGCTCCAGACGATAGACTTGACAAA 777
Query 778 CCTGCAGGGAGTAGTAAACAATCTAAACAGGATGGTTTCATTTGTGAAAAGAAGAAGAGC 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 CCTGCAGGGAGTAGTAAACAATCTAAACAGGATGGTTTCATTTGTGAGAAGAAGAAGAGC 837
Query 838 ATAAAAAACAAGGCACGTGTTGAGCAGGT 866
| ||||||||||||| ||||||||| |||
Sbjct 838 AAAAAAAACAAGGCAGGTGTTGAGCCGGT 866
Score = 403 bits (218), Expect = 5e-111
Identities = 242/254 (95%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 863 AGGTTACACCTTTAACCTGGCTTGAAGCCTGGCTTGACAATGTTATGGCAAGTGTGCCCG 922
||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1067 AGGTTACACCTTTGACATGGCTTGAAGCTTGGCTTGACAATGTAATGGCAAGTGTGCCCG 1126
Query 923 AGTTAGCAATTTGCTATCATGAGAACGGTATTGTCCAAGGGTATGAGCTTTTGAAAACAG 982
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1127 AGTTAGCAATTTGTTATCATGAGAACGGCATCGTCCAAGGGTATGAGCTTTTGAAAACAG 1186
Query 983 ACGATATATTTCTACTAAAAGGTATCTCTGAGGATGGTACACCTGCCTTTCATCCTCATG 1042
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1187 ACGATATATTTATACTAAAAGGTATCTCTGAGGATGGTACACCTGCTTTTCATCCTCATG 1246
Query 1043 TTGTTCAGCAAAACGGCCTTGCTATTTTAAGGTTTCTTCAATCAAATTGCAAAGAGGATC 1102
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1247 TTGTTCAGCAAAACGGCCTTGCTGTTTTAAGGTTTCTTCAATCAAATTGTAAAGAGGATC 1306
Query 1103 CTGGAGCTTATTGG 1116
||||||| ||||||
Sbjct 1307 CTGGAGCATATTGG 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171520778117
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5