BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473695
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35720.1 | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:... 2023 0.0
> AT1G35720.1 | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:13225197-13227195
FORWARD LENGTH=1317
Length=1317
Score = 2023 bits (1095), Expect = 0.0
Identities = 1246/1317 (95%), Gaps = 18/1317 (1%)
Strand=Plus/Plus
Query 1 CGGACAGGCCACGTCGTGTCCTAAACCTCTTAGCCTTTCCCTTTATAAGTCAATCTTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGACAGGCCACGTCGTGTCCTAAACCTCTTAGCCTTTCCCTTTATAAGTCAATCTTGTG 60
Query 61 TCGGCTTCGACTCTCAACATACATACACACCACT--AAGTAGAAGAGAAATGGCTACTCT 118
||||||||||||| |||||||| ||| | |||| |||||||||| ||||||| |||||
Sbjct 61 TCGGCTTCGACTCCCAACATAC--ACAAAACACTAAAAGTAGAAGAAAAATGGCGACTCT 118
Query 119 TAAGGTTTCTGATTCTGTTCCTGCTCCTTCTGAGGATGCTGAGCAACTGAGAACCGCTTT 178
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 119 TAAGGTTTCTGATTCTGTTCCTGCTCCTTCTGATGATGCTGAGCAATTGAGAACCGCTTT 178
Query 179 TGAAGGATGGGGTACGAACGAGGACTTGATCATATCAATCTTGGCTCACAGAAGTGCTGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGAAGGATGGGGTACGAACGAGGACTTGATCATATCAATCTTGGCTCACAGAAGTGCTGA 238
Query 239 ACAGAGGAAGGTGATCAGGCAAGCATACCATGAAACCTACGGCGAAGACCTTCTCAAGAC 298
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 ACAGAGGAAAGTCATCAGGCAAGCATACCACGAAACCTACGGCGAAGACCTTCTCAAGAC 298
Query 299 TCTTGACAAGGAACTCTCCAACGACTTCGAGAGAGCTATCTTGTTGTGGACTCTTGAACC 358
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTGACAAGGAGCTCTCTAACGATTTCGAGAGAGCTATCTTGTTGTGGACTCTTGAACC 358
Query 359 CGGTGAGCGTGATGCTTTATTGGCTAATGAAGCTACCAAAAGATGGACTTCAAGCAACCA 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 CGGTGAGCGTGATGCTTTATTGGCTAATGAAGCTACAAAAAGATGGACTTCAAGCAACCA 418
Query 419 AGTGCTTATGGAAGTAGCTTGCACAAGAACCTCAACGCAGCTTCTTCACGCTAGGCAAGC 478
||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 419 AGTTCTTATGGAAGTTGCTTGCACAAGGACATCAACGCAGCTGCTTCACGCTAGGCAAGC 478
Query 479 TTACCATGCTCGCTACAAGAAGTCTCTTGAAGAGGATGTCGCTCACCACACTACCGGTGA 538
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 479 TTACCATGCTCGCTACAAGAAGTCTCTTGAAGAGGACGTTGCTCACCACACTACCGGTGA 538
Query 539 CTTCAGAAAGCTTTTGGTTTCTCTTGTTACCTCATACAGGTACGAAGGCGATGAAGTGAA 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 CTTCAGAAAGCTTTTGGTTTCTCTTGTTACCTCATACAGGTACGAAGGAGATGAAGTGAA 598
Query 599 CATGACATTGGCTAAGCAAGAGGCTAAGCTGGTCTATGAGAAAATCAAGGACAAGCACTA 658
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 599 CATGACATTGGCTAAGCAAGAAGCTAAGCTGGTCCATGAGAAAATCAAGGACAAGCACTA 658
Query 659 CAACGATGAGGATGTTATTAGGATCTTGTCCACAAGGAGCAAAGCACAGATCAATGCTAC 718
||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 659 CAATGATGAGGATGTTATTAGAATCTTGTCCACAAGAAGCAAAGCTCAGATCAATGCTAC 718
Query 719 TTTTAACCGTTACCAAGATGATCATGGCGAGGAAATTCTCAAGAGTCTTGAGAAAGGAGA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTTTAACCGTTACCAAGATGATCATGGCGAGGAAATTCTCAAGAGTCTTGAGGAAGGAGA 778
Query 779 TGATGATGACAAGTTCCTTGCACTGTTGAGGTCAACGATTCAGTGCTTGACAAGACCAGA 838
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 779 TGATGATGACAAGTTCCTTGCACTTTTGAGGTCAACCATTCAGTGCTTGACAAGACCAGA 838
Query 839 GCTTTACTTTGTTGATGTTCTTCGTTCAGCAATCAACAAAACTGGAACCGATGAAGGAGC 898
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 GCTTTACTTTGTCGATGTTCTTCGTTCAGCAATCAACAAAACTGGAACTGATGAAGGAGC 898
Query 899 TCTCACTAGAATTGTGACCACAAGAGCTGAGATTGACTTGAAGGTCATTGGAGAGGAGTA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTCACTAGAATTGTGACCACAAGAGCTGAGATTGACTTGAAGGTCATTGGAGAGGAGTA 958
Query 959 CCAGCGCAGGAACAGCATTCCTTTGGAGAAAGCCATCACTAAAGACACTCGTGGAGATTA 1018
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 959 CCAGCGCAGGAACAGCATTCCTTTGGAGAAAGCTATTACCAAAGACACTCGTGGAGATTA 1018
Query 1019 CGAGAAGATGCTTGTCGCACTTCTCGGTGAAGACGATGCTTAATCAATCAATCCTCTACA 1078
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1019 CGAGAAGATGCTCGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCACA 1078
Query 1079 GAGAAACATAAGCT--TCTATAGCTTCTGTTTtctctcatctctctctctttctctTTGC 1136
|||||||||||||| |||| |||||||||| ||||| ||||| |||||| ||||||||
Sbjct 1079 GAGAAACATAAGCTGCTCTACAGCTTCTGTTATCTCTTATCTCCCTCTCTCTCTCTTTGA 1138
Query 1137 TGAATTTGTAATCGTTTGATTTTCGTT-CTTCAAAAACCTTGTTTGTTGT-TGTTGTATG 1194
||| ||| |||||||||||||| ||| || ||||||||||||||||| | |||||| ||
Sbjct 1139 TGAGTTTCAAATCGTTTGATTTT-GTTTCTACAAAAACCTTGTTTGTT-TCTGTTGTGTG 1196
Query 1195 TTTTGAGTTCCCAAATAATGCAAAAGAGAGAGA-A-------CCAGTGTGGTCTCTTAAG 1246
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1197 TTTTGAGTTCCTAAATAATGCAAAAGAGAGAGACAGAGAGAACCAGTGTGGTCTCTTAAG 1256
Query 1247 TtatatatatataAAGAGCATTGGCCTAAAACACAGACTAACAAGTAGTTCTGGTTT 1303
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTATATATATATGAAGAGCATTGGCCTAAAACACAGACTAACAAGTAGTTCTGGTTT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5